Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00379 and SMc00380 are separated by 8 nucleotides SMc00380 and SMc00381 are separated by 113 nucleotides SMc00381 and SMc00382 are separated by 238 nucleotides
SMc00379: SMc00379 - oxidoreductase, at 333,381 to 333,971
SMc00379
SMc00380: SMc00380 - transcriptional regulator, at 333,980 to 334,474
SMc00380
SMc00381: SMc00381 - hypothetical protein, at 334,588 to 335,460
SMc00381
SMc00382: SMc00382 - aminopeptidase, at 335,699 to 336,955
SMc00382
Position (kb) 334
335
336 Strain fitness (log2 ratio) -2
-1
0
1 at 333.758 kb on - strand, within SMc00379 at 333.807 kb on + strand, within SMc00379 at 333.807 kb on + strand, within SMc00379 at 333.807 kb on + strand, within SMc00379 at 333.807 kb on + strand, within SMc00379 at 333.936 kb on - strand at 334.463 kb on - strand at 334.514 kb on - strand at 334.556 kb on + strand at 334.594 kb on - strand at 334.637 kb on + strand at 334.637 kb on + strand at 334.647 kb on + strand at 334.647 kb on + strand at 334.647 kb on + strand at 334.647 kb on + strand at 334.648 kb on - strand at 334.651 kb on + strand at 334.651 kb on + strand at 334.651 kb on + strand at 334.652 kb on - strand at 334.832 kb on + strand, within SMc00381 at 334.859 kb on + strand, within SMc00381 at 334.860 kb on - strand, within SMc00381 at 334.860 kb on - strand, within SMc00381 at 335.215 kb on - strand, within SMc00381 at 335.218 kb on + strand, within SMc00381 at 335.218 kb on + strand, within SMc00381 at 335.248 kb on + strand, within SMc00381 at 335.248 kb on + strand, within SMc00381 at 335.248 kb on + strand, within SMc00381 at 335.248 kb on + strand, within SMc00381 at 335.248 kb on + strand, within SMc00381 at 335.248 kb on + strand, within SMc00381 at 335.249 kb on - strand, within SMc00381 at 335.249 kb on - strand, within SMc00381 at 335.422 kb on + strand at 335.481 kb on - strand at 335.481 kb on - strand at 335.481 kb on - strand at 335.483 kb on + strand at 335.483 kb on + strand at 335.491 kb on + strand at 335.491 kb on + strand at 335.491 kb on + strand at 335.491 kb on + strand at 335.491 kb on + strand at 335.491 kb on + strand at 335.491 kb on + strand at 335.491 kb on + strand at 335.491 kb on + strand at 335.492 kb on - strand at 335.492 kb on - strand at 335.492 kb on - strand at 335.492 kb on - strand at 335.493 kb on + strand at 335.493 kb on + strand at 335.493 kb on + strand at 335.493 kb on + strand at 335.493 kb on + strand at 335.494 kb on - strand at 335.494 kb on - strand at 335.494 kb on - strand at 335.494 kb on - strand at 335.494 kb on - strand at 335.570 kb on - strand at 335.694 kb on + strand at 335.695 kb on - strand at 335.875 kb on - strand, within SMc00382 at 335.875 kb on - strand, within SMc00382 at 335.929 kb on - strand, within SMc00382 at 336.091 kb on + strand, within SMc00382
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 333,758 - SMc00379 0.64 -0.6 333,807 + SMc00379 0.72 -0.2 333,807 + SMc00379 0.72 +0.6 333,807 + SMc00379 0.72 +0.5 333,807 + SMc00379 0.72 -0.1 333,936 - +0.1 334,463 - +0.2 334,514 - +0.5 334,556 + +0.6 334,594 - +0.3 334,637 + -0.2 334,637 + -0.2 334,647 + +0.1 334,647 + +0.7 334,647 + +0.1 334,647 + -0.1 334,648 - -0.5 334,651 + -0.4 334,651 + -0.0 334,651 + -0.3 334,652 - +0.3 334,832 + SMc00381 0.28 -0.1 334,859 + SMc00381 0.31 +0.6 334,860 - SMc00381 0.31 -0.1 334,860 - SMc00381 0.31 +0.2 335,215 - SMc00381 0.72 +0.2 335,218 + SMc00381 0.72 +0.1 335,218 + SMc00381 0.72 +0.6 335,248 + SMc00381 0.76 +0.2 335,248 + SMc00381 0.76 +0.2 335,248 + SMc00381 0.76 +0.0 335,248 + SMc00381 0.76 -1.6 335,248 + SMc00381 0.76 +0.4 335,248 + SMc00381 0.76 +0.2 335,249 - SMc00381 0.76 +0.4 335,249 - SMc00381 0.76 +0.1 335,422 + -2.2 335,481 - -0.1 335,481 - -0.1 335,481 - -0.6 335,483 + -0.0 335,483 + +0.2 335,491 + -0.2 335,491 + +0.0 335,491 + -0.2 335,491 + -1.5 335,491 + -0.1 335,491 + -0.3 335,491 + -1.1 335,491 + -0.2 335,491 + +0.6 335,492 - +0.2 335,492 - +0.2 335,492 - -0.8 335,492 - +0.7 335,493 + -0.0 335,493 + +0.1 335,493 + -0.5 335,493 + -0.6 335,493 + +0.1 335,494 - -0.3 335,494 - -1.1 335,494 - -0.3 335,494 - +0.1 335,494 - +0.0 335,570 - -0.1 335,694 + -0.5 335,695 - -0.3 335,875 - SMc00382 0.14 -0.2 335,875 - SMc00382 0.14 -0.1 335,929 - SMc00382 0.18 -0.7 336,091 + SMc00382 0.31 +0.0
Or see this region's nucleotide sequence