Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0958 and SMa0959 overlap by 4 nucleotides SMa0959 and SMa0961 are separated by 20 nucleotides SMa0961 and SMa0964 are separated by 47 nucleotides
SMa0958: SMa0958 - acetolactate synthase catalytic subunit, at 536,176 to 537,888
SMa0958
SMa0959: SMa0959 - 3-ketoacyl-ACP reductase, at 537,885 to 538,661
SMa0959
SMa0961: SMa0961 - Response regulator, at 538,682 to 539,404
SMa0961
SMa0964: SMa0964 - hypothetical protein, at 539,452 to 539,682
SMa0964
Position (kb) 537
538
539 Strain fitness (log2 ratio) -1
0
1 at 536.927 kb on - strand, within SMa0958 at 536.927 kb on - strand, within SMa0958 at 536.927 kb on - strand, within SMa0958 at 536.992 kb on + strand, within SMa0958 at 536.992 kb on + strand, within SMa0958 at 536.993 kb on - strand, within SMa0958 at 536.993 kb on - strand, within SMa0958 at 537.133 kb on + strand, within SMa0958 at 537.134 kb on - strand, within SMa0958 at 537.134 kb on - strand, within SMa0958 at 537.134 kb on - strand, within SMa0958 at 537.183 kb on - strand, within SMa0958 at 537.183 kb on - strand, within SMa0958 at 537.259 kb on + strand, within SMa0958 at 537.259 kb on + strand, within SMa0958 at 537.260 kb on - strand, within SMa0958 at 537.260 kb on - strand, within SMa0958 at 537.356 kb on + strand, within SMa0958 at 537.368 kb on + strand, within SMa0958 at 537.447 kb on + strand, within SMa0958 at 537.609 kb on + strand, within SMa0958 at 537.610 kb on - strand, within SMa0958 at 537.610 kb on - strand, within SMa0958 at 537.679 kb on + strand, within SMa0958 at 537.679 kb on + strand, within SMa0958 at 537.813 kb on - strand at 538.102 kb on + strand, within SMa0959 at 538.102 kb on + strand, within SMa0959 at 538.103 kb on - strand, within SMa0959 at 538.103 kb on - strand, within SMa0959 at 538.103 kb on - strand, within SMa0959 at 538.171 kb on + strand, within SMa0959 at 538.171 kb on + strand, within SMa0959 at 538.334 kb on + strand, within SMa0959 at 538.374 kb on + strand, within SMa0959 at 538.374 kb on + strand, within SMa0959 at 538.374 kb on + strand, within SMa0959 at 538.375 kb on - strand, within SMa0959 at 538.375 kb on - strand, within SMa0959 at 538.375 kb on - strand, within SMa0959 at 538.508 kb on - strand, within SMa0959 at 538.508 kb on - strand, within SMa0959 at 538.589 kb on + strand at 538.701 kb on + strand at 538.701 kb on + strand at 538.701 kb on + strand at 538.702 kb on - strand at 538.702 kb on - strand at 538.703 kb on + strand at 538.703 kb on + strand at 538.703 kb on + strand at 538.703 kb on + strand at 538.703 kb on + strand at 538.704 kb on - strand at 538.705 kb on + strand at 538.706 kb on - strand at 538.801 kb on + strand, within SMa0961 at 538.866 kb on - strand, within SMa0961 at 538.934 kb on - strand, within SMa0961 at 539.088 kb on + strand, within SMa0961 at 539.088 kb on + strand, within SMa0961 at 539.088 kb on + strand, within SMa0961 at 539.089 kb on - strand, within SMa0961 at 539.116 kb on - strand, within SMa0961 at 539.136 kb on + strand, within SMa0961 at 539.151 kb on + strand, within SMa0961 at 539.272 kb on + strand, within SMa0961 at 539.273 kb on - strand, within SMa0961 at 539.317 kb on + strand, within SMa0961 at 539.328 kb on + strand, within SMa0961 at 539.482 kb on + strand, within SMa0964 at 539.543 kb on + strand, within SMa0964 at 539.543 kb on + strand, within SMa0964 at 539.543 kb on + strand, within SMa0964
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 536,927 - SMa0958 0.44 +0.2 536,927 - SMa0958 0.44 -0.2 536,927 - SMa0958 0.44 -0.1 536,992 + SMa0958 0.48 -0.5 536,992 + SMa0958 0.48 +0.2 536,993 - SMa0958 0.48 -0.3 536,993 - SMa0958 0.48 -0.1 537,133 + SMa0958 0.56 -0.2 537,134 - SMa0958 0.56 -0.2 537,134 - SMa0958 0.56 +0.2 537,134 - SMa0958 0.56 -0.2 537,183 - SMa0958 0.59 +1.0 537,183 - SMa0958 0.59 -1.2 537,259 + SMa0958 0.63 -0.8 537,259 + SMa0958 0.63 +0.1 537,260 - SMa0958 0.63 +0.3 537,260 - SMa0958 0.63 -0.8 537,356 + SMa0958 0.69 -0.4 537,368 + SMa0958 0.70 +0.4 537,447 + SMa0958 0.74 -1.2 537,609 + SMa0958 0.84 -0.3 537,610 - SMa0958 0.84 -0.3 537,610 - SMa0958 0.84 -0.0 537,679 + SMa0958 0.88 +0.4 537,679 + SMa0958 0.88 -0.0 537,813 - +0.6 538,102 + SMa0959 0.28 +0.4 538,102 + SMa0959 0.28 +0.1 538,103 - SMa0959 0.28 +0.3 538,103 - SMa0959 0.28 -1.0 538,103 - SMa0959 0.28 +0.4 538,171 + SMa0959 0.37 +0.7 538,171 + SMa0959 0.37 +1.0 538,334 + SMa0959 0.58 -0.2 538,374 + SMa0959 0.63 +0.5 538,374 + SMa0959 0.63 +0.2 538,374 + SMa0959 0.63 +0.4 538,375 - SMa0959 0.63 +0.5 538,375 - SMa0959 0.63 +0.2 538,375 - SMa0959 0.63 +0.3 538,508 - SMa0959 0.80 -1.0 538,508 - SMa0959 0.80 -0.4 538,589 + +0.1 538,701 + -0.2 538,701 + -0.5 538,701 + -0.3 538,702 - -0.4 538,702 - +0.3 538,703 + -0.5 538,703 + -0.5 538,703 + -0.0 538,703 + -0.1 538,703 + -0.4 538,704 - -0.2 538,705 + +1.1 538,706 - +0.2 538,801 + SMa0961 0.16 -1.2 538,866 - SMa0961 0.25 +0.8 538,934 - SMa0961 0.35 +0.1 539,088 + SMa0961 0.56 +0.4 539,088 + SMa0961 0.56 -1.0 539,088 + SMa0961 0.56 -0.1 539,089 - SMa0961 0.56 +0.3 539,116 - SMa0961 0.60 +0.3 539,136 + SMa0961 0.63 -0.2 539,151 + SMa0961 0.65 -0.1 539,272 + SMa0961 0.82 -0.5 539,273 - SMa0961 0.82 +0.6 539,317 + SMa0961 0.88 +0.1 539,328 + SMa0961 0.89 -0.4 539,482 + SMa0964 0.13 +0.2 539,543 + SMa0964 0.39 -0.3 539,543 + SMa0964 0.39 +0.1 539,543 + SMa0964 0.39 -0.5
Or see this region's nucleotide sequence