Strain Fitness in Sinorhizobium meliloti 1021 around SMa0220

Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0218 and SMa0220 are separated by 120 nucleotidesSMa0220 and SMa0222 are separated by 91 nucleotidesSMa0222 and SMa0223 are separated by 73 nucleotides SMa0218: SMa0218 - ABC transporter substrate-binding protein, at 119,373 to 120,323 SMa0218 SMa0220: SMa0220 - NAD-dependent aldehyde dehydrogenase, at 120,444 to 121,958 SMa0220 SMa0222: SMa0222 - GntR family transcriptional regulator, at 122,050 to 122,778 SMa0222 SMa0223: SMa0223 - TetR family transcriptional regulator, at 122,852 to 123,637 SMa0223 Position (kb) 120 121 122Strain fitness (log2 ratio) -2 -1 0 1 2at 119.470 kb on + strand, within SMa0218at 119.471 kb on - strand, within SMa0218at 119.502 kb on + strand, within SMa0218at 119.519 kb on - strand, within SMa0218at 119.542 kb on + strand, within SMa0218at 119.542 kb on + strand, within SMa0218at 119.542 kb on + strand, within SMa0218at 119.543 kb on - strand, within SMa0218at 119.568 kb on + strand, within SMa0218at 119.611 kb on - strand, within SMa0218at 119.903 kb on - strand, within SMa0218at 119.932 kb on + strand, within SMa0218at 119.932 kb on + strand, within SMa0218at 119.933 kb on - strand, within SMa0218at 119.933 kb on - strand, within SMa0218at 119.933 kb on - strand, within SMa0218at 120.131 kb on - strand, within SMa0218at 120.220 kb on + strand, within SMa0218at 120.221 kb on - strand, within SMa0218at 120.328 kb on + strandat 120.328 kb on + strandat 120.412 kb on + strandat 120.412 kb on + strandat 120.412 kb on + strandat 120.413 kb on - strandat 120.445 kb on + strandat 120.502 kb on + strandat 120.551 kb on + strandat 120.552 kb on + strandat 120.554 kb on - strandat 120.705 kb on + strand, within SMa0220at 120.814 kb on + strand, within SMa0220at 120.814 kb on + strand, within SMa0220at 120.815 kb on - strand, within SMa0220at 120.817 kb on + strand, within SMa0220at 120.817 kb on + strand, within SMa0220at 120.817 kb on + strand, within SMa0220at 120.817 kb on + strand, within SMa0220at 120.818 kb on - strand, within SMa0220at 120.818 kb on - strand, within SMa0220at 120.892 kb on + strand, within SMa0220at 120.893 kb on - strand, within SMa0220at 120.985 kb on - strand, within SMa0220at 121.075 kb on + strand, within SMa0220at 121.076 kb on - strand, within SMa0220at 121.084 kb on + strand, within SMa0220at 121.285 kb on + strand, within SMa0220at 121.302 kb on - strand, within SMa0220at 121.460 kb on + strand, within SMa0220at 121.460 kb on + strand, within SMa0220at 121.460 kb on + strand, within SMa0220at 121.461 kb on - strand, within SMa0220at 121.461 kb on - strand, within SMa0220at 121.461 kb on - strand, within SMa0220at 121.907 kb on + strandat 121.959 kb on + strandat 121.960 kb on - strandat 122.416 kb on - strand, within SMa0222at 122.447 kb on + strandat 122.448 kb on - strand, within SMa0222at 122.448 kb on - strand, within SMa0222at 122.956 kb on + strand, within SMa0223

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI
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119,470 + SMa0218 0.10 +0.8
119,471 - SMa0218 0.10 +2.6
119,502 + SMa0218 0.14 -1.5
119,519 - SMa0218 0.15 +0.1
119,542 + SMa0218 0.18 -0.2
119,542 + SMa0218 0.18 +0.1
119,542 + SMa0218 0.18 +0.2
119,543 - SMa0218 0.18 +0.5
119,568 + SMa0218 0.21 +0.6
119,611 - SMa0218 0.25 -0.6
119,903 - SMa0218 0.56 -0.3
119,932 + SMa0218 0.59 -0.3
119,932 + SMa0218 0.59 +1.2
119,933 - SMa0218 0.59 -0.6
119,933 - SMa0218 0.59 -0.4
119,933 - SMa0218 0.59 +0.1
120,131 - SMa0218 0.80 -0.2
120,220 + SMa0218 0.89 +0.1
120,221 - SMa0218 0.89 +0.0
120,328 + +2.0
120,328 + +0.2
120,412 + -0.6
120,412 + +0.4
120,412 + -0.7
120,413 - +0.3
120,445 + -1.8
120,502 + +0.1
120,551 + +0.9
120,552 + -0.8
120,554 - -0.3
120,705 + SMa0220 0.17 -0.9
120,814 + SMa0220 0.24 +0.2
120,814 + SMa0220 0.24 -0.1
120,815 - SMa0220 0.24 +0.4
120,817 + SMa0220 0.25 -0.2
120,817 + SMa0220 0.25 +0.6
120,817 + SMa0220 0.25 +0.1
120,817 + SMa0220 0.25 -0.1
120,818 - SMa0220 0.25 +1.3
120,818 - SMa0220 0.25 +0.2
120,892 + SMa0220 0.30 -0.7
120,893 - SMa0220 0.30 +1.6
120,985 - SMa0220 0.36 +0.8
121,075 + SMa0220 0.42 +0.7
121,076 - SMa0220 0.42 +0.2
121,084 + SMa0220 0.42 -0.1
121,285 + SMa0220 0.56 +0.1
121,302 - SMa0220 0.57 +0.6
121,460 + SMa0220 0.67 +0.9
121,460 + SMa0220 0.67 +0.2
121,460 + SMa0220 0.67 -0.0
121,461 - SMa0220 0.67 +0.2
121,461 - SMa0220 0.67 +0.6
121,461 - SMa0220 0.67 +0.2
121,907 + +0.2
121,959 + -0.4
121,960 - -0.5
122,416 - SMa0222 0.50 +1.1
122,447 + +0.0
122,448 - SMa0222 0.55 -0.8
122,448 - SMa0222 0.55 -1.5
122,956 + SMa0223 0.13 +0.7

Or see this region's nucleotide sequence