Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21218

Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21216 and SM_b21217 overlap by 4 nucleotidesSM_b21217 and SM_b21218 are separated by 2 nucleotidesSM_b21218 and SM_b21219 are separated by 2 nucleotidesSM_b21219 and SM_b21220 overlap by 1 nucleotides SM_b21216: SM_b21216 - ABC transporter for D-Glucosamine, ATPase component (from data), at 778,729 to 779,811 _b21216 SM_b21217: SM_b21217 - glucosamine kinase (EC 2.7.1.8) (from data), at 779,808 to 780,743 _b21217 SM_b21218: SM_b21218 - glucosamine-6-phosphate deaminase, isomerizing (EC 3.5.99.6) (from data), at 780,746 to 781,765 _b21218 SM_b21219: SM_b21219 - ABC transporter for D-Glucosamine, permease component 1 (from data), at 781,768 to 782,613 _b21219 SM_b21220: SM_b21220 - ABC transporter for D-Glucosamine, permease component 2 (from data), at 782,613 to 783,494 _b21220 Position (kb) 780 781 782Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 779.982 kb on - strand, within SM_b21217at 780.141 kb on - strand, within SM_b21217at 780.301 kb on + strand, within SM_b21217at 780.301 kb on + strand, within SM_b21217at 780.302 kb on - strand, within SM_b21217at 780.302 kb on - strand, within SM_b21217at 780.311 kb on + strand, within SM_b21217at 780.311 kb on + strand, within SM_b21217at 780.311 kb on + strand, within SM_b21217at 780.350 kb on - strand, within SM_b21217at 780.577 kb on + strand, within SM_b21217at 780.577 kb on + strand, within SM_b21217at 780.699 kb on + strandat 780.699 kb on + strandat 780.848 kb on - strand, within SM_b21218at 780.848 kb on - strand, within SM_b21218at 781.414 kb on + strand, within SM_b21218at 781.415 kb on - strand, within SM_b21218at 781.758 kb on - strandat 781.758 kb on - strandat 781.821 kb on + strandat 781.822 kb on - strandat 781.822 kb on - strandat 781.822 kb on - strandat 781.822 kb on - strandat 781.822 kb on - strandat 781.822 kb on - strandat 781.964 kb on + strand, within SM_b21219at 782.166 kb on - strand, within SM_b21219at 782.208 kb on - strand, within SM_b21219at 782.221 kb on - strand, within SM_b21219at 782.222 kb on + strand, within SM_b21219at 782.222 kb on + strand, within SM_b21219at 782.222 kb on + strand, within SM_b21219at 782.222 kb on + strand, within SM_b21219at 782.222 kb on + strand, within SM_b21219at 782.222 kb on + strand, within SM_b21219at 782.222 kb on + strand, within SM_b21219at 782.223 kb on - strand, within SM_b21219at 782.223 kb on - strand, within SM_b21219at 782.223 kb on - strand, within SM_b21219at 782.256 kb on + strand, within SM_b21219at 782.256 kb on + strand, within SM_b21219at 782.256 kb on + strand, within SM_b21219at 782.257 kb on - strand, within SM_b21219at 782.257 kb on - strand, within SM_b21219at 782.257 kb on - strand, within SM_b21219at 782.258 kb on + strand, within SM_b21219at 782.258 kb on + strand, within SM_b21219at 782.258 kb on + strand, within SM_b21219at 782.258 kb on + strand, within SM_b21219at 782.258 kb on + strand, within SM_b21219at 782.258 kb on + strand, within SM_b21219at 782.259 kb on - strand, within SM_b21219at 782.259 kb on - strand, within SM_b21219at 782.259 kb on - strand, within SM_b21219at 782.259 kb on - strand, within SM_b21219at 782.259 kb on - strand, within SM_b21219at 782.259 kb on - strand, within SM_b21219at 782.259 kb on - strand, within SM_b21219

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI
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779,982 - SM_b21217 0.19 +0.0
780,141 - SM_b21217 0.36 -0.3
780,301 + SM_b21217 0.53 -0.4
780,301 + SM_b21217 0.53 -0.2
780,302 - SM_b21217 0.53 +0.3
780,302 - SM_b21217 0.53 -0.4
780,311 + SM_b21217 0.54 +0.9
780,311 + SM_b21217 0.54 +0.3
780,311 + SM_b21217 0.54 +0.2
780,350 - SM_b21217 0.58 -0.4
780,577 + SM_b21217 0.82 +0.8
780,577 + SM_b21217 0.82 +0.1
780,699 + -0.4
780,699 + -0.1
780,848 - SM_b21218 0.10 +1.0
780,848 - SM_b21218 0.10 +0.2
781,414 + SM_b21218 0.65 +0.7
781,415 - SM_b21218 0.66 -0.1
781,758 - -0.2
781,758 - +0.9
781,821 + -0.4
781,822 - +0.3
781,822 - -0.1
781,822 - -0.5
781,822 - -0.0
781,822 - -0.1
781,822 - -0.6
781,964 + SM_b21219 0.23 +0.0
782,166 - SM_b21219 0.47 +0.5
782,208 - SM_b21219 0.52 -0.3
782,221 - SM_b21219 0.54 -0.1
782,222 + SM_b21219 0.54 +0.2
782,222 + SM_b21219 0.54 -1.0
782,222 + SM_b21219 0.54 -1.5
782,222 + SM_b21219 0.54 -0.2
782,222 + SM_b21219 0.54 -0.4
782,222 + SM_b21219 0.54 +0.5
782,222 + SM_b21219 0.54 -0.6
782,223 - SM_b21219 0.54 -0.2
782,223 - SM_b21219 0.54 -0.5
782,223 - SM_b21219 0.54 -0.6
782,256 + SM_b21219 0.58 +1.0
782,256 + SM_b21219 0.58 -0.1
782,256 + SM_b21219 0.58 +0.2
782,257 - SM_b21219 0.58 -0.3
782,257 - SM_b21219 0.58 -0.1
782,257 - SM_b21219 0.58 +0.4
782,258 + SM_b21219 0.58 +2.3
782,258 + SM_b21219 0.58 +0.2
782,258 + SM_b21219 0.58 +0.6
782,258 + SM_b21219 0.58 -4.3
782,258 + SM_b21219 0.58 -0.3
782,258 + SM_b21219 0.58 +0.6
782,259 - SM_b21219 0.58 +0.2
782,259 - SM_b21219 0.58 -0.0
782,259 - SM_b21219 0.58 +1.2
782,259 - SM_b21219 0.58 -0.2
782,259 - SM_b21219 0.58 -0.3
782,259 - SM_b21219 0.58 -0.5
782,259 - SM_b21219 0.58 -0.2

Or see this region's nucleotide sequence