Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04138 and SMc04137 are separated by 22 nucleotides SMc04137 and SMc04136 overlap by 8 nucleotides SMc04136 and SMc04135 are separated by 14 nucleotides
SMc04138: SMc04138 - oxidoreductase, at 133,661 to 134,677
SMc04138
SMc04137: SMc04137 - ABC transporter permease, at 134,700 to 135,587
SMc04137
SMc04136: SMc04136 - ABC transporter permease, at 135,580 to 136,527
SMc04136
SMc04135: SMc04135 - periplasmic binding ABC transporter protein, at 136,542 to 137,825
SMc04135
Position (kb) 135
136
137 Strain fitness (log2 ratio) -2
-1
0
1 at 134.628 kb on + strand at 134.628 kb on + strand at 134.629 kb on - strand at 134.866 kb on + strand, within SMc04137 at 134.866 kb on + strand, within SMc04137 at 134.867 kb on - strand, within SMc04137 at 134.887 kb on + strand, within SMc04137 at 135.043 kb on - strand, within SMc04137 at 135.158 kb on - strand, within SMc04137 at 135.158 kb on - strand, within SMc04137 at 135.182 kb on - strand, within SMc04137 at 135.256 kb on + strand, within SMc04137 at 135.256 kb on + strand, within SMc04137 at 135.256 kb on + strand, within SMc04137 at 135.256 kb on + strand, within SMc04137 at 135.256 kb on + strand, within SMc04137 at 135.256 kb on + strand, within SMc04137 at 135.370 kb on + strand, within SMc04137 at 135.371 kb on - strand, within SMc04137 at 135.371 kb on - strand, within SMc04137 at 135.371 kb on - strand, within SMc04137 at 135.467 kb on - strand, within SMc04137 at 135.590 kb on + strand at 135.590 kb on + strand at 135.591 kb on - strand at 135.716 kb on + strand, within SMc04136 at 135.725 kb on + strand, within SMc04136 at 135.864 kb on - strand, within SMc04136 at 135.908 kb on + strand, within SMc04136 at 135.908 kb on + strand, within SMc04136 at 135.908 kb on + strand, within SMc04136 at 135.909 kb on - strand, within SMc04136 at 136.004 kb on + strand, within SMc04136 at 136.004 kb on + strand, within SMc04136 at 136.005 kb on - strand, within SMc04136 at 136.139 kb on + strand, within SMc04136 at 136.139 kb on + strand, within SMc04136 at 136.139 kb on + strand, within SMc04136 at 136.241 kb on + strand, within SMc04136 at 136.241 kb on + strand, within SMc04136 at 136.242 kb on - strand, within SMc04136 at 136.302 kb on - strand, within SMc04136 at 136.302 kb on - strand, within SMc04136 at 136.361 kb on + strand, within SMc04136 at 136.361 kb on + strand, within SMc04136 at 136.362 kb on - strand, within SMc04136 at 136.362 kb on - strand, within SMc04136 at 136.362 kb on - strand, within SMc04136 at 136.454 kb on - strand at 136.544 kb on - strand at 136.721 kb on - strand, within SMc04135 at 136.721 kb on - strand, within SMc04135 at 136.852 kb on + strand, within SMc04135 at 137.068 kb on + strand, within SMc04135 at 137.068 kb on + strand, within SMc04135 at 137.068 kb on + strand, within SMc04135 at 137.120 kb on - strand, within SMc04135 at 137.260 kb on + strand, within SMc04135 at 137.260 kb on + strand, within SMc04135 at 137.261 kb on - strand, within SMc04135
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 134,628 + -0.2 134,628 + -0.5 134,629 - +1.1 134,866 + SMc04137 0.19 -0.4 134,866 + SMc04137 0.19 -0.2 134,867 - SMc04137 0.19 +0.3 134,887 + SMc04137 0.21 +1.3 135,043 - SMc04137 0.39 -0.9 135,158 - SMc04137 0.52 +0.5 135,158 - SMc04137 0.52 -0.1 135,182 - SMc04137 0.54 -0.5 135,256 + SMc04137 0.63 +0.6 135,256 + SMc04137 0.63 -0.7 135,256 + SMc04137 0.63 +1.1 135,256 + SMc04137 0.63 -0.3 135,256 + SMc04137 0.63 +0.5 135,256 + SMc04137 0.63 -0.2 135,370 + SMc04137 0.75 +0.1 135,371 - SMc04137 0.76 -0.0 135,371 - SMc04137 0.76 -0.3 135,371 - SMc04137 0.76 -0.5 135,467 - SMc04137 0.86 -0.1 135,590 + -0.6 135,590 + +1.3 135,591 - +0.1 135,716 + SMc04136 0.14 -0.9 135,725 + SMc04136 0.15 -0.5 135,864 - SMc04136 0.30 -1.9 135,908 + SMc04136 0.35 -0.8 135,908 + SMc04136 0.35 +0.4 135,908 + SMc04136 0.35 -0.2 135,909 - SMc04136 0.35 -0.2 136,004 + SMc04136 0.45 -0.0 136,004 + SMc04136 0.45 -0.4 136,005 - SMc04136 0.45 -0.3 136,139 + SMc04136 0.59 +0.2 136,139 + SMc04136 0.59 +0.4 136,139 + SMc04136 0.59 +0.6 136,241 + SMc04136 0.70 -1.8 136,241 + SMc04136 0.70 -0.7 136,242 - SMc04136 0.70 -0.1 136,302 - SMc04136 0.76 -0.2 136,302 - SMc04136 0.76 +0.6 136,361 + SMc04136 0.82 +1.0 136,361 + SMc04136 0.82 -0.0 136,362 - SMc04136 0.82 +0.1 136,362 - SMc04136 0.82 +0.3 136,362 - SMc04136 0.82 -0.1 136,454 - -0.0 136,544 - +0.4 136,721 - SMc04135 0.14 -0.5 136,721 - SMc04135 0.14 +0.7 136,852 + SMc04135 0.24 +0.3 137,068 + SMc04135 0.41 -0.8 137,068 + SMc04135 0.41 -1.3 137,068 + SMc04135 0.41 -0.3 137,120 - SMc04135 0.45 -0.7 137,260 + SMc04135 0.56 -0.1 137,260 + SMc04135 0.56 -0.5 137,261 - SMc04135 0.56 -0.2
Or see this region's nucleotide sequence