Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04137 and SMc04136 overlap by 8 nucleotides SMc04136 and SMc04135 are separated by 14 nucleotides SMc04135 and SMc04134 are separated by 194 nucleotides SMc04134 and SMc04133 are separated by 122 nucleotides
SMc04137: SMc04137 - ABC transporter permease, at 134,700 to 135,587
SMc04137
SMc04136: SMc04136 - ABC transporter permease, at 135,580 to 136,527
SMc04136
SMc04135: SMc04135 - periplasmic binding ABC transporter protein, at 136,542 to 137,825
SMc04135
SMc04134: SMc04134 - transcriptional regulator, at 138,020 to 138,697
SMc04134
SMc04133: SMc04133 - oxidoreductase, at 138,820 to 139,968
SMc04133
Position (kb) 136
137
138 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 135.590 kb on + strand at 135.590 kb on + strand at 135.591 kb on - strand at 135.716 kb on + strand, within SMc04136 at 135.725 kb on + strand, within SMc04136 at 135.864 kb on - strand, within SMc04136 at 135.908 kb on + strand, within SMc04136 at 135.908 kb on + strand, within SMc04136 at 135.908 kb on + strand, within SMc04136 at 135.909 kb on - strand, within SMc04136 at 136.004 kb on + strand, within SMc04136 at 136.004 kb on + strand, within SMc04136 at 136.005 kb on - strand, within SMc04136 at 136.139 kb on + strand, within SMc04136 at 136.139 kb on + strand, within SMc04136 at 136.139 kb on + strand, within SMc04136 at 136.241 kb on + strand, within SMc04136 at 136.241 kb on + strand, within SMc04136 at 136.242 kb on - strand, within SMc04136 at 136.302 kb on - strand, within SMc04136 at 136.302 kb on - strand, within SMc04136 at 136.361 kb on + strand, within SMc04136 at 136.361 kb on + strand, within SMc04136 at 136.362 kb on - strand, within SMc04136 at 136.362 kb on - strand, within SMc04136 at 136.362 kb on - strand, within SMc04136 at 136.454 kb on - strand at 136.544 kb on - strand at 136.721 kb on - strand, within SMc04135 at 136.721 kb on - strand, within SMc04135 at 136.852 kb on + strand, within SMc04135 at 137.068 kb on + strand, within SMc04135 at 137.068 kb on + strand, within SMc04135 at 137.068 kb on + strand, within SMc04135 at 137.120 kb on - strand, within SMc04135 at 137.260 kb on + strand, within SMc04135 at 137.260 kb on + strand, within SMc04135 at 137.261 kb on - strand, within SMc04135 at 137.528 kb on - strand, within SMc04135 at 137.528 kb on - strand, within SMc04135 at 137.540 kb on - strand, within SMc04135 at 137.540 kb on - strand, within SMc04135 at 137.796 kb on + strand at 137.942 kb on - strand at 138.156 kb on + strand, within SMc04134 at 138.222 kb on - strand, within SMc04134 at 138.269 kb on + strand, within SMc04134 at 138.269 kb on + strand, within SMc04134 at 138.472 kb on - strand, within SMc04134 at 138.548 kb on + strand, within SMc04134 at 138.572 kb on + strand, within SMc04134 at 138.594 kb on - strand, within SMc04134 at 138.761 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 135,590 + -0.6 135,590 + +1.3 135,591 - +0.1 135,716 + SMc04136 0.14 -0.9 135,725 + SMc04136 0.15 -0.5 135,864 - SMc04136 0.30 -1.9 135,908 + SMc04136 0.35 -0.8 135,908 + SMc04136 0.35 +0.4 135,908 + SMc04136 0.35 -0.2 135,909 - SMc04136 0.35 -0.2 136,004 + SMc04136 0.45 -0.0 136,004 + SMc04136 0.45 -0.4 136,005 - SMc04136 0.45 -0.3 136,139 + SMc04136 0.59 +0.2 136,139 + SMc04136 0.59 +0.4 136,139 + SMc04136 0.59 +0.6 136,241 + SMc04136 0.70 -1.8 136,241 + SMc04136 0.70 -0.7 136,242 - SMc04136 0.70 -0.1 136,302 - SMc04136 0.76 -0.2 136,302 - SMc04136 0.76 +0.6 136,361 + SMc04136 0.82 +1.0 136,361 + SMc04136 0.82 -0.0 136,362 - SMc04136 0.82 +0.1 136,362 - SMc04136 0.82 +0.3 136,362 - SMc04136 0.82 -0.1 136,454 - -0.0 136,544 - +0.4 136,721 - SMc04135 0.14 -0.5 136,721 - SMc04135 0.14 +0.7 136,852 + SMc04135 0.24 +0.3 137,068 + SMc04135 0.41 -0.8 137,068 + SMc04135 0.41 -1.3 137,068 + SMc04135 0.41 -0.3 137,120 - SMc04135 0.45 -0.7 137,260 + SMc04135 0.56 -0.1 137,260 + SMc04135 0.56 -0.5 137,261 - SMc04135 0.56 -0.2 137,528 - SMc04135 0.77 +0.5 137,528 - SMc04135 0.77 +0.1 137,540 - SMc04135 0.78 -0.1 137,540 - SMc04135 0.78 -0.5 137,796 + -0.5 137,942 - +0.1 138,156 + SMc04134 0.20 +0.1 138,222 - SMc04134 0.30 -0.7 138,269 + SMc04134 0.37 -0.9 138,269 + SMc04134 0.37 -2.8 138,472 - SMc04134 0.67 -0.9 138,548 + SMc04134 0.78 -0.4 138,572 + SMc04134 0.81 -0.4 138,594 - SMc04134 0.85 -1.0 138,761 + +0.3
Or see this region's nucleotide sequence