Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03810 and SMc03811 overlap by 4 nucleotides SMc03811 and SMc03812 overlap by 1 nucleotides
SMc03810: SMc03810 - hypothetical protein, at 3,476,946 to 3,477,755
SMc03810
SMc03811: SMc03811 - hypothetical protein, at 3,477,752 to 3,478,582
SMc03811
SMc03812: SMc03812 - oxidoreductase, at 3,478,582 to 3,479,658
SMc03812
Position (kb)
3477
3478
3479 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3476.810 kb on - strand at 3476.959 kb on + strand at 3477.001 kb on + strand at 3477.365 kb on + strand, within SMc03810 at 3477.366 kb on - strand, within SMc03810 at 3477.518 kb on - strand, within SMc03810 at 3477.871 kb on - strand, within SMc03811 at 3477.880 kb on - strand, within SMc03811 at 3478.368 kb on + strand, within SMc03811 at 3478.368 kb on + strand, within SMc03811 at 3478.369 kb on - strand, within SMc03811 at 3478.369 kb on - strand, within SMc03811 at 3478.748 kb on + strand, within SMc03812 at 3478.749 kb on - strand, within SMc03812 at 3478.749 kb on - strand, within SMc03812 at 3478.827 kb on - strand, within SMc03812 at 3478.827 kb on - strand, within SMc03812 at 3478.827 kb on - strand, within SMc03812 at 3478.829 kb on + strand, within SMc03812 at 3478.839 kb on + strand, within SMc03812 at 3478.840 kb on - strand, within SMc03812 at 3478.840 kb on - strand, within SMc03812 at 3478.841 kb on + strand, within SMc03812 at 3478.841 kb on + strand, within SMc03812 at 3478.842 kb on - strand, within SMc03812 at 3478.842 kb on - strand, within SMc03812 at 3478.842 kb on - strand at 3478.842 kb on - strand, within SMc03812 at 3479.030 kb on + strand, within SMc03812 at 3479.031 kb on - strand, within SMc03812 at 3479.031 kb on - strand, within SMc03812 at 3479.072 kb on + strand, within SMc03812 at 3479.072 kb on + strand, within SMc03812 at 3479.072 kb on + strand, within SMc03812 at 3479.073 kb on - strand, within SMc03812 at 3479.073 kb on - strand, within SMc03812 at 3479.075 kb on + strand, within SMc03812 at 3479.165 kb on + strand, within SMc03812 at 3479.186 kb on + strand, within SMc03812 at 3479.481 kb on - strand, within SMc03812 at 3479.545 kb on - strand, within SMc03812 at 3479.545 kb on - strand, within SMc03812
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 3,476,810 - +0.1 3,476,959 + +0.4 3,477,001 + +2.2 3,477,365 + SMc03810 0.52 -0.2 3,477,366 - SMc03810 0.52 +0.1 3,477,518 - SMc03810 0.71 +0.5 3,477,871 - SMc03811 0.14 -0.6 3,477,880 - SMc03811 0.15 -0.9 3,478,368 + SMc03811 0.74 -2.4 3,478,368 + SMc03811 0.74 +0.2 3,478,369 - SMc03811 0.74 +0.0 3,478,369 - SMc03811 0.74 -0.3 3,478,748 + SMc03812 0.15 +0.4 3,478,749 - SMc03812 0.16 -0.8 3,478,749 - SMc03812 0.16 +0.8 3,478,827 - SMc03812 0.23 +1.1 3,478,827 - SMc03812 0.23 -1.0 3,478,827 - SMc03812 0.23 +0.8 3,478,829 + SMc03812 0.23 +1.2 3,478,839 + SMc03812 0.24 -0.5 3,478,840 - SMc03812 0.24 -1.3 3,478,840 - SMc03812 0.24 +1.8 3,478,841 + SMc03812 0.24 +0.2 3,478,841 + SMc03812 0.24 +0.8 3,478,842 - SMc03812 0.24 -1.6 3,478,842 - SMc03812 0.24 -1.2 3,478,842 - +0.3 3,478,842 - SMc03812 0.24 +0.2 3,479,030 + SMc03812 0.42 -0.1 3,479,031 - SMc03812 0.42 +0.1 3,479,031 - SMc03812 0.42 -0.1 3,479,072 + SMc03812 0.45 -0.1 3,479,072 + SMc03812 0.45 -0.2 3,479,072 + SMc03812 0.45 -0.5 3,479,073 - SMc03812 0.46 +0.5 3,479,073 - SMc03812 0.46 -0.2 3,479,075 + SMc03812 0.46 +1.1 3,479,165 + SMc03812 0.54 -0.1 3,479,186 + SMc03812 0.56 -0.1 3,479,481 - SMc03812 0.83 +1.8 3,479,545 - SMc03812 0.89 -1.0 3,479,545 - SMc03812 0.89 +1.0
Or see this region's nucleotide sequence