Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03279 and SMc03280 are separated by 48 nucleotides SMc03280 and SMc03281 overlap by 131 nucleotides SMc03281 and SMc03282 overlap by 4 nucleotides
SMc03279: SMc03279 - transposase number 2 for insertion sequence ISRM28, at 3,394,191 to 3,394,547
SMc03279
SMc03280: SMc03280 - transposase number 3 for insertion sequence ISRM28, at 3,394,596 to 3,395,336
SMc03280
SMc03281: SMc03281 - transposase, at 3,395,206 to 3,395,949
SMc03281
SMc03282: SMc03282 - transposase number 1 for insertion sequence ISRM27, at 3,395,946 to 3,397,460
SMc03282
Position (kb)
3395
3396 Strain fitness (log2 ratio)
-1
0
1
2 at 3394.308 kb on + strand, within SMc03279 at 3394.391 kb on - strand, within SMc03279 at 3394.618 kb on + strand at 3394.619 kb on - strand at 3394.899 kb on + strand, within SMc03280 at 3394.899 kb on + strand, within SMc03280 at 3395.037 kb on + strand, within SMc03280 at 3395.038 kb on - strand, within SMc03280 at 3395.038 kb on - strand, within SMc03280 at 3395.115 kb on - strand, within SMc03280 at 3395.357 kb on + strand, within SMc03281 at 3395.358 kb on - strand, within SMc03281 at 3395.414 kb on + strand, within SMc03281 at 3395.415 kb on - strand, within SMc03281 at 3395.415 kb on - strand, within SMc03281 at 3395.415 kb on - strand, within SMc03281 at 3395.415 kb on - strand, within SMc03281 at 3395.415 kb on - strand, within SMc03281 at 3395.622 kb on + strand, within SMc03281 at 3395.646 kb on + strand, within SMc03281 at 3395.646 kb on + strand, within SMc03281 at 3395.926 kb on + strand at 3395.927 kb on - strand at 3395.927 kb on - strand at 3395.966 kb on - strand at 3395.989 kb on + strand at 3395.989 kb on + strand at 3395.989 kb on + strand at 3395.989 kb on + strand at 3395.989 kb on + strand at 3395.990 kb on - strand at 3395.990 kb on - strand at 3395.990 kb on - strand at 3395.990 kb on - strand at 3395.993 kb on + strand at 3395.994 kb on - strand at 3396.313 kb on + strand, within SMc03282 at 3396.314 kb on - strand, within SMc03282 at 3396.314 kb on - strand, within SMc03282 at 3396.460 kb on + strand, within SMc03282 at 3396.461 kb on - strand, within SMc03282 at 3396.461 kb on - strand, within SMc03282 at 3396.631 kb on + strand, within SMc03282 at 3396.868 kb on + strand, within SMc03282 at 3396.868 kb on + strand, within SMc03282
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 3,394,308 + SMc03279 0.33 -0.3 3,394,391 - SMc03279 0.56 -0.5 3,394,618 + +0.6 3,394,619 - -0.5 3,394,899 + SMc03280 0.41 +0.7 3,394,899 + SMc03280 0.41 +0.5 3,395,037 + SMc03280 0.60 -0.7 3,395,038 - SMc03280 0.60 +0.6 3,395,038 - SMc03280 0.60 +0.4 3,395,115 - SMc03280 0.70 -0.2 3,395,357 + SMc03281 0.20 +1.9 3,395,358 - SMc03281 0.20 +1.0 3,395,414 + SMc03281 0.28 +0.2 3,395,415 - SMc03281 0.28 -0.3 3,395,415 - SMc03281 0.28 +0.5 3,395,415 - SMc03281 0.28 -0.2 3,395,415 - SMc03281 0.28 +0.6 3,395,415 - SMc03281 0.28 +0.1 3,395,622 + SMc03281 0.56 -0.2 3,395,646 + SMc03281 0.59 -0.9 3,395,646 + SMc03281 0.59 +0.2 3,395,926 + +0.2 3,395,927 - +0.4 3,395,927 - -0.4 3,395,966 - +0.6 3,395,989 + -0.2 3,395,989 + -0.0 3,395,989 + +0.8 3,395,989 + +0.2 3,395,989 + -0.7 3,395,990 - +0.8 3,395,990 - +0.3 3,395,990 - +0.7 3,395,990 - +0.6 3,395,993 + +0.3 3,395,994 - -0.8 3,396,313 + SMc03282 0.24 +0.4 3,396,314 - SMc03282 0.24 -0.5 3,396,314 - SMc03282 0.24 +0.2 3,396,460 + SMc03282 0.34 +0.5 3,396,461 - SMc03282 0.34 -0.6 3,396,461 - SMc03282 0.34 +0.1 3,396,631 + SMc03282 0.45 +0.1 3,396,868 + SMc03282 0.61 -0.1 3,396,868 + SMc03282 0.61 -0.0
Or see this region's nucleotide sequence