Strain Fitness in Sinorhizobium meliloti 1021 around SMc03281

Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03279 and SMc03280 are separated by 48 nucleotidesSMc03280 and SMc03281 overlap by 131 nucleotidesSMc03281 and SMc03282 overlap by 4 nucleotides SMc03279: SMc03279 - transposase number 2 for insertion sequence ISRM28, at 3,394,191 to 3,394,547 SMc03279 SMc03280: SMc03280 - transposase number 3 for insertion sequence ISRM28, at 3,394,596 to 3,395,336 SMc03280 SMc03281: SMc03281 - transposase, at 3,395,206 to 3,395,949 SMc03281 SMc03282: SMc03282 - transposase number 1 for insertion sequence ISRM27, at 3,395,946 to 3,397,460 SMc03282 Position (kb) 3395 3396Strain fitness (log2 ratio) -1 0 1 2at 3394.308 kb on + strand, within SMc03279at 3394.391 kb on - strand, within SMc03279at 3394.618 kb on + strandat 3394.619 kb on - strandat 3394.899 kb on + strand, within SMc03280at 3394.899 kb on + strand, within SMc03280at 3395.037 kb on + strand, within SMc03280at 3395.038 kb on - strand, within SMc03280at 3395.038 kb on - strand, within SMc03280at 3395.115 kb on - strand, within SMc03280at 3395.357 kb on + strand, within SMc03281at 3395.358 kb on - strand, within SMc03281at 3395.414 kb on + strand, within SMc03281at 3395.415 kb on - strand, within SMc03281at 3395.415 kb on - strand, within SMc03281at 3395.415 kb on - strand, within SMc03281at 3395.415 kb on - strand, within SMc03281at 3395.415 kb on - strand, within SMc03281at 3395.622 kb on + strand, within SMc03281at 3395.646 kb on + strand, within SMc03281at 3395.646 kb on + strand, within SMc03281at 3395.926 kb on + strandat 3395.927 kb on - strandat 3395.927 kb on - strandat 3395.966 kb on - strandat 3395.989 kb on + strandat 3395.989 kb on + strandat 3395.989 kb on + strandat 3395.989 kb on + strandat 3395.989 kb on + strandat 3395.990 kb on - strandat 3395.990 kb on - strandat 3395.990 kb on - strandat 3395.990 kb on - strandat 3395.993 kb on + strandat 3395.994 kb on - strandat 3396.313 kb on + strand, within SMc03282at 3396.314 kb on - strand, within SMc03282at 3396.314 kb on - strand, within SMc03282at 3396.460 kb on + strand, within SMc03282at 3396.461 kb on - strand, within SMc03282at 3396.461 kb on - strand, within SMc03282at 3396.631 kb on + strand, within SMc03282at 3396.868 kb on + strand, within SMc03282at 3396.868 kb on + strand, within SMc03282

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI
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3,394,308 + SMc03279 0.33 -0.3
3,394,391 - SMc03279 0.56 -0.5
3,394,618 + +0.6
3,394,619 - -0.5
3,394,899 + SMc03280 0.41 +0.7
3,394,899 + SMc03280 0.41 +0.5
3,395,037 + SMc03280 0.60 -0.7
3,395,038 - SMc03280 0.60 +0.6
3,395,038 - SMc03280 0.60 +0.4
3,395,115 - SMc03280 0.70 -0.2
3,395,357 + SMc03281 0.20 +1.9
3,395,358 - SMc03281 0.20 +1.0
3,395,414 + SMc03281 0.28 +0.2
3,395,415 - SMc03281 0.28 -0.3
3,395,415 - SMc03281 0.28 +0.5
3,395,415 - SMc03281 0.28 -0.2
3,395,415 - SMc03281 0.28 +0.6
3,395,415 - SMc03281 0.28 +0.1
3,395,622 + SMc03281 0.56 -0.2
3,395,646 + SMc03281 0.59 -0.9
3,395,646 + SMc03281 0.59 +0.2
3,395,926 + +0.2
3,395,927 - +0.4
3,395,927 - -0.4
3,395,966 - +0.6
3,395,989 + -0.2
3,395,989 + -0.0
3,395,989 + +0.8
3,395,989 + +0.2
3,395,989 + -0.7
3,395,990 - +0.8
3,395,990 - +0.3
3,395,990 - +0.7
3,395,990 - +0.6
3,395,993 + +0.3
3,395,994 - -0.8
3,396,313 + SMc03282 0.24 +0.4
3,396,314 - SMc03282 0.24 -0.5
3,396,314 - SMc03282 0.24 +0.2
3,396,460 + SMc03282 0.34 +0.5
3,396,461 - SMc03282 0.34 -0.6
3,396,461 - SMc03282 0.34 +0.1
3,396,631 + SMc03282 0.45 +0.1
3,396,868 + SMc03282 0.61 -0.1
3,396,868 + SMc03282 0.61 -0.0

Or see this region's nucleotide sequence