Strain Fitness in Sinorhizobium meliloti 1021 around SMc02296

Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02295 and SMc02296 overlap by 4 nucleotidesSMc02296 and SMc02297 are separated by 109 nucleotides SMc02295: SMc02295 - specificity protein S, at 667,807 to 669,081 SMc02295 SMc02296: SMc02296 - modification enzyme transmembrane protein, at 669,078 to 670,658 SMc02296 SMc02297: SMc02297 - integrase/resolvase recombinase, at 670,768 to 672,309 SMc02297 Position (kb) 669 670 671Strain fitness (log2 ratio) -2 -1 0 1 2 3at 668.148 kb on + strand, within SMc02295at 668.148 kb on + strand, within SMc02295at 668.149 kb on - strand, within SMc02295at 668.171 kb on - strand, within SMc02295at 668.171 kb on - strand, within SMc02295at 668.171 kb on - strand, within SMc02295at 668.235 kb on + strand, within SMc02295at 668.241 kb on + strand, within SMc02295at 668.241 kb on + strand, within SMc02295at 668.320 kb on + strand, within SMc02295at 668.320 kb on + strand, within SMc02295at 668.321 kb on - strand, within SMc02295at 668.321 kb on - strand, within SMc02295at 668.321 kb on - strand, within SMc02295at 668.321 kb on - strand, within SMc02295at 668.328 kb on + strand, within SMc02295at 668.329 kb on - strand, within SMc02295at 668.329 kb on - strand, within SMc02295at 668.329 kb on - strandat 668.330 kb on + strand, within SMc02295at 668.330 kb on + strand, within SMc02295at 668.331 kb on - strand, within SMc02295at 668.331 kb on - strand, within SMc02295at 668.337 kb on + strand, within SMc02295at 668.338 kb on - strand, within SMc02295at 668.623 kb on + strand, within SMc02295at 668.625 kb on + strand, within SMc02295at 668.625 kb on + strand, within SMc02295at 668.625 kb on + strand, within SMc02295at 668.626 kb on - strand, within SMc02295at 668.626 kb on - strand, within SMc02295at 668.637 kb on + strand, within SMc02295at 668.637 kb on + strand, within SMc02295at 668.637 kb on + strand, within SMc02295at 668.638 kb on - strand, within SMc02295at 668.647 kb on + strand, within SMc02295at 668.647 kb on + strand, within SMc02295at 668.647 kb on + strand, within SMc02295at 668.647 kb on + strand, within SMc02295at 668.647 kb on + strand, within SMc02295at 668.648 kb on - strand, within SMc02295at 668.706 kb on + strand, within SMc02295at 668.717 kb on + strand, within SMc02295at 668.717 kb on + strand, within SMc02295at 668.718 kb on - strand, within SMc02295at 668.718 kb on - strand, within SMc02295at 668.863 kb on + strand, within SMc02295at 668.864 kb on - strand, within SMc02295at 669.096 kb on + strandat 669.223 kb on + strandat 669.224 kb on - strandat 669.237 kb on - strand, within SMc02296at 669.390 kb on - strand, within SMc02296at 669.708 kb on + strand, within SMc02296at 669.718 kb on + strand, within SMc02296at 669.719 kb on - strand, within SMc02296at 669.719 kb on - strand, within SMc02296at 669.798 kb on + strand, within SMc02296at 669.798 kb on + strand, within SMc02296at 669.799 kb on - strand, within SMc02296at 669.904 kb on + strand, within SMc02296at 669.997 kb on + strand, within SMc02296at 669.998 kb on - strand, within SMc02296at 669.998 kb on - strand, within SMc02296at 669.998 kb on - strand, within SMc02296at 670.105 kb on + strand, within SMc02296at 670.153 kb on + strand, within SMc02296at 670.153 kb on + strand, within SMc02296at 670.211 kb on - strand, within SMc02296at 670.211 kb on - strand, within SMc02296at 670.211 kb on - strand, within SMc02296at 670.297 kb on + strand, within SMc02296at 670.298 kb on - strand, within SMc02296at 670.298 kb on - strand, within SMc02296at 670.405 kb on + strand, within SMc02296at 670.406 kb on - strand, within SMc02296at 670.429 kb on - strand, within SMc02296at 670.429 kb on - strand, within SMc02296at 670.453 kb on + strand, within SMc02296at 670.453 kb on + strand, within SMc02296at 670.570 kb on + strandat 670.570 kb on + strandat 670.571 kb on - strandat 670.662 kb on + strandat 670.663 kb on - strandat 670.668 kb on - strandat 670.744 kb on + strandat 670.745 kb on - strandat 670.747 kb on + strandat 670.770 kb on - strandat 670.864 kb on + strandat 670.864 kb on + strandat 670.864 kb on + strandat 670.864 kb on + strandat 670.865 kb on - strandat 670.921 kb on + strandat 670.922 kb on - strandat 670.946 kb on - strand, within SMc02297at 671.014 kb on - strand, within SMc02297at 671.054 kb on + strand, within SMc02297at 671.066 kb on + strand, within SMc02297at 671.067 kb on - strand, within SMc02297at 671.182 kb on - strand, within SMc02297at 671.182 kb on - strand, within SMc02297at 671.243 kb on + strand, within SMc02297at 671.243 kb on + strand, within SMc02297at 671.243 kb on + strand, within SMc02297at 671.243 kb on + strand, within SMc02297at 671.244 kb on - strand, within SMc02297at 671.244 kb on - strand, within SMc02297at 671.244 kb on - strand, within SMc02297at 671.248 kb on + strand, within SMc02297at 671.248 kb on + strand, within SMc02297at 671.249 kb on - strand, within SMc02297at 671.249 kb on - strand, within SMc02297at 671.249 kb on - strand, within SMc02297at 671.249 kb on - strand, within SMc02297at 671.250 kb on + strand, within SMc02297at 671.250 kb on + strand, within SMc02297at 671.251 kb on - strand, within SMc02297at 671.251 kb on - strand, within SMc02297at 671.251 kb on - strand, within SMc02297at 671.317 kb on + strand, within SMc02297at 671.408 kb on + strand, within SMc02297at 671.409 kb on - strand, within SMc02297at 671.434 kb on + strand, within SMc02297at 671.528 kb on + strand, within SMc02297at 671.529 kb on - strand, within SMc02297at 671.529 kb on - strand, within SMc02297at 671.529 kb on - strand, within SMc02297at 671.611 kb on + strand, within SMc02297at 671.611 kb on + strand, within SMc02297at 671.611 kb on + strand, within SMc02297at 671.611 kb on + strand, within SMc02297

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI
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668,148 + SMc02295 0.27 +0.8
668,148 + SMc02295 0.27 -0.4
668,149 - SMc02295 0.27 +0.2
668,171 - SMc02295 0.29 -0.2
668,171 - SMc02295 0.29 -0.0
668,171 - SMc02295 0.29 -1.5
668,235 + SMc02295 0.34 +1.0
668,241 + SMc02295 0.34 -0.3
668,241 + SMc02295 0.34 +0.4
668,320 + SMc02295 0.40 +0.2
668,320 + SMc02295 0.40 -0.2
668,321 - SMc02295 0.40 +0.4
668,321 - SMc02295 0.40 -0.4
668,321 - SMc02295 0.40 -2.0
668,321 - SMc02295 0.40 +1.3
668,328 + SMc02295 0.41 -0.9
668,329 - SMc02295 0.41 -1.3
668,329 - SMc02295 0.41 +2.5
668,329 - -0.0
668,330 + SMc02295 0.41 +1.5
668,330 + SMc02295 0.41 -0.1
668,331 - SMc02295 0.41 +0.7
668,331 - SMc02295 0.41 +0.2
668,337 + SMc02295 0.42 +0.7
668,338 - SMc02295 0.42 -0.2
668,623 + SMc02295 0.64 +0.2
668,625 + SMc02295 0.64 -1.8
668,625 + SMc02295 0.64 +0.5
668,625 + SMc02295 0.64 +0.2
668,626 - SMc02295 0.64 +0.3
668,626 - SMc02295 0.64 +0.5
668,637 + SMc02295 0.65 +3.2
668,637 + SMc02295 0.65 +0.3
668,637 + SMc02295 0.65 +1.2
668,638 - SMc02295 0.65 +1.5
668,647 + SMc02295 0.66 +0.3
668,647 + SMc02295 0.66 -0.9
668,647 + SMc02295 0.66 -0.9
668,647 + SMc02295 0.66 +0.3
668,647 + SMc02295 0.66 -1.1
668,648 - SMc02295 0.66 -1.8
668,706 + SMc02295 0.71 +1.1
668,717 + SMc02295 0.71 +0.1
668,717 + SMc02295 0.71 +0.8
668,718 - SMc02295 0.71 +0.3
668,718 - SMc02295 0.71 +0.6
668,863 + SMc02295 0.83 +1.5
668,864 - SMc02295 0.83 +0.2
669,096 + -0.1
669,223 + +1.6
669,224 - +0.0
669,237 - SMc02296 0.10 -0.5
669,390 - SMc02296 0.20 +0.2
669,708 + SMc02296 0.40 +0.6
669,718 + SMc02296 0.40 +0.9
669,719 - SMc02296 0.41 +0.2
669,719 - SMc02296 0.41 +0.6
669,798 + SMc02296 0.46 +0.2
669,798 + SMc02296 0.46 +0.3
669,799 - SMc02296 0.46 +0.2
669,904 + SMc02296 0.52 -0.4
669,997 + SMc02296 0.58 -1.2
669,998 - SMc02296 0.58 -0.4
669,998 - SMc02296 0.58 +1.6
669,998 - SMc02296 0.58 +1.0
670,105 + SMc02296 0.65 -1.2
670,153 + SMc02296 0.68 +1.3
670,153 + SMc02296 0.68 -0.4
670,211 - SMc02296 0.72 +1.2
670,211 - SMc02296 0.72 -0.6
670,211 - SMc02296 0.72 -0.1
670,297 + SMc02296 0.77 -0.1
670,298 - SMc02296 0.77 +0.7
670,298 - SMc02296 0.77 +0.1
670,405 + SMc02296 0.84 +0.0
670,406 - SMc02296 0.84 -0.5
670,429 - SMc02296 0.85 +1.5
670,429 - SMc02296 0.85 +1.4
670,453 + SMc02296 0.87 +0.6
670,453 + SMc02296 0.87 +0.5
670,570 + +0.6
670,570 + +0.0
670,571 - +2.2
670,662 + +1.3
670,663 - -0.1
670,668 - +0.6
670,744 + -1.0
670,745 - -0.2
670,747 + -1.5
670,770 - +0.4
670,864 + -0.4
670,864 + -0.4
670,864 + +1.8
670,864 + +0.4
670,865 - -0.6
670,921 + -0.5
670,922 - -0.1
670,946 - SMc02297 0.12 -0.7
671,014 - SMc02297 0.16 -0.9
671,054 + SMc02297 0.19 -0.2
671,066 + SMc02297 0.19 +1.5
671,067 - SMc02297 0.19 -0.6
671,182 - SMc02297 0.27 +0.1
671,182 - SMc02297 0.27 -0.1
671,243 + SMc02297 0.31 -0.3
671,243 + SMc02297 0.31 +0.0
671,243 + SMc02297 0.31 +0.1
671,243 + SMc02297 0.31 +0.6
671,244 - SMc02297 0.31 +0.7
671,244 - SMc02297 0.31 +0.1
671,244 - SMc02297 0.31 -2.2
671,248 + SMc02297 0.31 -0.3
671,248 + SMc02297 0.31 -0.2
671,249 - SMc02297 0.31 +1.2
671,249 - SMc02297 0.31 +0.1
671,249 - SMc02297 0.31 -0.4
671,249 - SMc02297 0.31 -1.4
671,250 + SMc02297 0.31 -0.2
671,250 + SMc02297 0.31 +1.5
671,251 - SMc02297 0.31 -0.5
671,251 - SMc02297 0.31 +0.2
671,251 - SMc02297 0.31 +0.3
671,317 + SMc02297 0.36 +1.0
671,408 + SMc02297 0.42 -0.1
671,409 - SMc02297 0.42 +0.9
671,434 + SMc02297 0.43 +0.6
671,528 + SMc02297 0.49 -0.2
671,529 - SMc02297 0.49 -0.2
671,529 - SMc02297 0.49 -0.1
671,529 - SMc02297 0.49 -0.2
671,611 + SMc02297 0.55 -0.8
671,611 + SMc02297 0.55 +0.2
671,611 + SMc02297 0.55 -0.2
671,611 + SMc02297 0.55 -0.1

Or see this region's nucleotide sequence