Strain Fitness in Sinorhizobium meliloti 1021 around SMc00651

Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00652 and SMc00651 are separated by 364 nucleotidesSMc00651 and SMc00650 are separated by 148 nucleotides SMc00652: SMc00652 - hypothetical protein, at 2,923,767 to 2,924,432 SMc00652 SMc00651: SMc00651 - hypothetical protein, at 2,924,797 to 2,925,399 SMc00651 SMc00650: SMc00650 - hypothetical protein, at 2,925,548 to 2,926,630 SMc00650 Position (kb) 2924 2925 2926Strain fitness (log2 ratio) -2 -1 0 1at 2924.520 kb on - strandat 2924.548 kb on - strandat 2924.592 kb on + strandat 2924.675 kb on + strandat 2924.675 kb on + strandat 2924.675 kb on + strandat 2925.457 kb on + strandat 2925.487 kb on + strandat 2926.047 kb on + strand, within SMc00650at 2926.047 kb on + strand, within SMc00650

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI
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2,924,520 - +0.5
2,924,548 - -1.8
2,924,592 + +0.7
2,924,675 + +0.5
2,924,675 + +0.1
2,924,675 + -0.0
2,925,457 + -2.2
2,925,487 + +0.2
2,926,047 + SMc00650 0.46 +1.2
2,926,047 + SMc00650 0.46 +0.8

Or see this region's nucleotide sequence