Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1680 and SMa1682 are separated by 60 nucleotides SMa1682 and SMa1683 are separated by 82 nucleotides
SMa1680: SMa1680 - hypothetical protein, at 943,416 to 945,809
SMa1680
SMa1682: SMa1682 - nonspecific acid phosphatase precursor, at 945,870 to 946,883
SMa1682
SMa1683: SMa1683 - arylsulfatase, at 946,966 to 948,633
SMa1683
Position (kb) 945
946
947 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 945.082 kb on + strand, within SMa1680 at 945.082 kb on + strand, within SMa1680 at 945.083 kb on - strand, within SMa1680 at 945.083 kb on - strand, within SMa1680 at 945.083 kb on - strand, within SMa1680 at 945.083 kb on - strand, within SMa1680 at 945.093 kb on - strand, within SMa1680 at 945.094 kb on + strand, within SMa1680 at 945.094 kb on + strand, within SMa1680 at 945.300 kb on + strand, within SMa1680 at 945.300 kb on + strand, within SMa1680 at 945.301 kb on - strand, within SMa1680 at 945.305 kb on - strand, within SMa1680 at 945.305 kb on - strand, within SMa1680 at 945.332 kb on + strand, within SMa1680 at 945.333 kb on - strand, within SMa1680 at 945.333 kb on - strand, within SMa1680 at 945.334 kb on + strand, within SMa1680 at 945.660 kb on + strand at 945.660 kb on + strand at 945.661 kb on - strand at 945.816 kb on + strand at 945.871 kb on + strand at 945.871 kb on + strand at 945.872 kb on - strand at 945.986 kb on - strand, within SMa1682 at 946.020 kb on + strand, within SMa1682 at 946.020 kb on + strand, within SMa1682 at 946.020 kb on + strand, within SMa1682 at 946.021 kb on - strand, within SMa1682 at 946.021 kb on - strand, within SMa1682 at 946.021 kb on - strand, within SMa1682 at 946.021 kb on - strand, within SMa1682 at 946.121 kb on + strand, within SMa1682 at 946.122 kb on - strand, within SMa1682 at 946.239 kb on + strand, within SMa1682 at 946.346 kb on - strand, within SMa1682 at 946.346 kb on - strand, within SMa1682 at 946.346 kb on - strand, within SMa1682 at 946.388 kb on - strand, within SMa1682 at 946.492 kb on - strand, within SMa1682 at 946.628 kb on + strand, within SMa1682 at 946.630 kb on + strand, within SMa1682 at 946.630 kb on + strand, within SMa1682 at 946.630 kb on + strand, within SMa1682 at 946.631 kb on - strand, within SMa1682 at 946.631 kb on - strand, within SMa1682 at 946.631 kb on - strand, within SMa1682 at 946.967 kb on + strand at 946.968 kb on - strand at 946.968 kb on - strand at 947.066 kb on + strand at 947.067 kb on - strand at 947.166 kb on + strand, within SMa1683 at 947.168 kb on + strand, within SMa1683 at 947.169 kb on - strand, within SMa1683 at 947.169 kb on - strand, within SMa1683 at 947.189 kb on + strand, within SMa1683 at 947.190 kb on - strand, within SMa1683 at 947.190 kb on - strand, within SMa1683 at 947.335 kb on - strand, within SMa1683 at 947.335 kb on - strand, within SMa1683 at 947.335 kb on - strand, within SMa1683 at 947.336 kb on + strand, within SMa1683 at 947.336 kb on + strand, within SMa1683 at 947.337 kb on - strand, within SMa1683 at 947.441 kb on + strand, within SMa1683 at 947.441 kb on + strand, within SMa1683 at 947.441 kb on + strand, within SMa1683 at 947.486 kb on - strand, within SMa1683 at 947.617 kb on + strand, within SMa1683 at 947.618 kb on - strand, within SMa1683 at 947.800 kb on - strand, within SMa1683
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 945,082 + SMa1680 0.70 +0.5 945,082 + SMa1680 0.70 -0.6 945,083 - SMa1680 0.70 -0.5 945,083 - SMa1680 0.70 -0.3 945,083 - SMa1680 0.70 +1.4 945,083 - SMa1680 0.70 +0.0 945,093 - SMa1680 0.70 +0.4 945,094 + SMa1680 0.70 -0.5 945,094 + SMa1680 0.70 -0.7 945,300 + SMa1680 0.79 +0.8 945,300 + SMa1680 0.79 -0.5 945,301 - SMa1680 0.79 +1.0 945,305 - SMa1680 0.79 -0.4 945,305 - SMa1680 0.79 -0.1 945,332 + SMa1680 0.80 -1.8 945,333 - SMa1680 0.80 +1.2 945,333 - SMa1680 0.80 +0.4 945,334 + SMa1680 0.80 +0.9 945,660 + -1.3 945,660 + +0.3 945,661 - -0.1 945,816 + +0.3 945,871 + +0.5 945,871 + +0.1 945,872 - +0.3 945,986 - SMa1682 0.11 +0.2 946,020 + SMa1682 0.15 -0.1 946,020 + SMa1682 0.15 +0.8 946,020 + SMa1682 0.15 -0.1 946,021 - SMa1682 0.15 -0.1 946,021 - SMa1682 0.15 -0.2 946,021 - SMa1682 0.15 -0.1 946,021 - SMa1682 0.15 +0.0 946,121 + SMa1682 0.25 +1.0 946,122 - SMa1682 0.25 +1.4 946,239 + SMa1682 0.36 +1.5 946,346 - SMa1682 0.47 +0.5 946,346 - SMa1682 0.47 +1.0 946,346 - SMa1682 0.47 -0.2 946,388 - SMa1682 0.51 +0.7 946,492 - SMa1682 0.61 -0.1 946,628 + SMa1682 0.75 +1.4 946,630 + SMa1682 0.75 +0.3 946,630 + SMa1682 0.75 -1.6 946,630 + SMa1682 0.75 -0.1 946,631 - SMa1682 0.75 -0.1 946,631 - SMa1682 0.75 +0.2 946,631 - SMa1682 0.75 +0.4 946,967 + +0.2 946,968 - +0.0 946,968 - -1.4 947,066 + +0.2 947,067 - +0.4 947,166 + SMa1683 0.12 +3.7 947,168 + SMa1683 0.12 -0.9 947,169 - SMa1683 0.12 +0.1 947,169 - SMa1683 0.12 +0.3 947,189 + SMa1683 0.13 -0.0 947,190 - SMa1683 0.13 +0.1 947,190 - SMa1683 0.13 -0.2 947,335 - SMa1683 0.22 +0.1 947,335 - SMa1683 0.22 +0.6 947,335 - SMa1683 0.22 -0.3 947,336 + SMa1683 0.22 -1.1 947,336 + SMa1683 0.22 +0.5 947,337 - SMa1683 0.22 +0.4 947,441 + SMa1683 0.28 -0.3 947,441 + SMa1683 0.28 -0.3 947,441 + SMa1683 0.28 -0.1 947,486 - SMa1683 0.31 +0.2 947,617 + SMa1683 0.39 -1.2 947,618 - SMa1683 0.39 +0.0 947,800 - SMa1683 0.50 -0.1
Or see this region's nucleotide sequence