Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1176 and SMa1178 are separated by 279 nucleotides SMa1178 and SMa1179 are separated by 171 nucleotides
SMa1176: SMa1176 - hypothetical protein, at 643,876 to 644,394
SMa1176
SMa1178: SMa1178 - hypothetical protein, at 644,674 to 645,504
SMa1178
SMa1179: SMa1179 - NosR regulatory protein for N2O reductase, at 645,676 to 647,943
SMa1179
Position (kb) 644
645
646 Strain fitness (log2 ratio) -1
0
1
2 at 643.698 kb on + strand at 643.725 kb on - strand at 643.994 kb on - strand, within SMa1176 at 644.183 kb on + strand, within SMa1176 at 644.256 kb on + strand, within SMa1176 at 644.462 kb on + strand at 644.462 kb on + strand at 644.463 kb on - strand at 644.502 kb on - strand at 644.574 kb on - strand at 644.607 kb on - strand at 644.613 kb on + strand at 644.614 kb on - strand at 644.614 kb on - strand at 644.675 kb on + strand at 644.676 kb on - strand at 644.694 kb on - strand at 644.875 kb on + strand, within SMa1178 at 644.875 kb on + strand, within SMa1178 at 644.959 kb on + strand, within SMa1178 at 645.150 kb on - strand, within SMa1178 at 645.150 kb on - strand, within SMa1178 at 645.206 kb on + strand, within SMa1178 at 645.265 kb on + strand, within SMa1178 at 645.266 kb on - strand, within SMa1178 at 645.298 kb on + strand, within SMa1178 at 645.343 kb on + strand, within SMa1178 at 645.411 kb on - strand, within SMa1178 at 645.589 kb on - strand at 645.680 kb on - strand at 645.693 kb on - strand at 645.696 kb on + strand at 645.696 kb on + strand at 645.696 kb on + strand at 645.696 kb on + strand at 645.696 kb on + strand at 645.696 kb on + strand at 645.697 kb on - strand at 645.697 kb on - strand at 645.697 kb on - strand at 645.697 kb on - strand at 645.697 kb on - strand at 645.697 kb on - strand at 645.705 kb on - strand at 645.794 kb on - strand at 645.911 kb on - strand, within SMa1179 at 646.038 kb on - strand, within SMa1179 at 646.040 kb on + strand, within SMa1179 at 646.040 kb on + strand, within SMa1179 at 646.040 kb on + strand, within SMa1179 at 646.041 kb on - strand, within SMa1179 at 646.283 kb on + strand, within SMa1179 at 646.348 kb on - strand, within SMa1179 at 646.447 kb on + strand, within SMa1179
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 643,698 + +1.2 643,725 - -0.6 643,994 - SMa1176 0.23 +0.7 644,183 + SMa1176 0.59 +0.2 644,256 + SMa1176 0.73 +0.1 644,462 + -0.4 644,462 + +2.0 644,463 - -0.4 644,502 - -0.2 644,574 - +0.2 644,607 - -1.0 644,613 + +0.1 644,614 - -0.6 644,614 - -0.4 644,675 + -0.1 644,676 - -0.6 644,694 - +0.2 644,875 + SMa1178 0.24 +1.3 644,875 + SMa1178 0.24 -1.3 644,959 + SMa1178 0.34 +0.4 645,150 - SMa1178 0.57 +0.0 645,150 - SMa1178 0.57 +0.4 645,206 + SMa1178 0.64 +0.8 645,265 + SMa1178 0.71 +0.3 645,266 - SMa1178 0.71 +1.9 645,298 + SMa1178 0.75 +0.8 645,343 + SMa1178 0.81 -0.2 645,411 - SMa1178 0.89 +0.2 645,589 - +0.2 645,680 - +0.7 645,693 - +0.9 645,696 + +0.3 645,696 + +0.2 645,696 + -0.1 645,696 + -0.0 645,696 + -0.3 645,696 + +1.2 645,697 - +0.0 645,697 - +0.1 645,697 - +0.2 645,697 - +0.4 645,697 - +0.5 645,697 - +0.1 645,705 - +0.7 645,794 - +0.7 645,911 - SMa1179 0.10 +0.3 646,038 - SMa1179 0.16 +0.1 646,040 + SMa1179 0.16 +0.0 646,040 + SMa1179 0.16 -0.0 646,040 + SMa1179 0.16 +0.2 646,041 - SMa1179 0.16 +0.2 646,283 + SMa1179 0.27 -0.7 646,348 - SMa1179 0.30 +0.1 646,447 + SMa1179 0.34 +2.6
Or see this region's nucleotide sequence