Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0796 and SMa0797 are separated by 5 nucleotides SMa0797 and SMa0799 are separated by 37 nucleotides
SMa0796: SMa0796 - hypothetical protein, at 434,028 to 435,491
SMa0796
SMa0797: SMa0797 - hypothetical protein, at 435,497 to 435,823
SMa0797
SMa0799: SMa0799 - ABC transporter substrate-binding protein, at 435,861 to 436,871
SMa0799
Position (kb) 435
436 Strain fitness (log2 ratio) -1
0
1
2 at 434.693 kb on - strand, within SMa0796 at 434.693 kb on - strand, within SMa0796 at 434.693 kb on - strand, within SMa0796 at 434.726 kb on + strand, within SMa0796 at 434.726 kb on + strand, within SMa0796 at 434.728 kb on + strand, within SMa0796 at 434.728 kb on + strand, within SMa0796 at 434.728 kb on + strand, within SMa0796 at 434.728 kb on + strand, within SMa0796 at 434.728 kb on + strand at 434.728 kb on + strand, within SMa0796 at 434.728 kb on + strand, within SMa0796 at 434.728 kb on + strand, within SMa0796 at 434.729 kb on - strand, within SMa0796 at 434.729 kb on - strand, within SMa0796 at 434.731 kb on + strand, within SMa0796 at 435.105 kb on + strand, within SMa0796 at 435.105 kb on + strand, within SMa0796 at 435.105 kb on + strand, within SMa0796 at 435.329 kb on + strand, within SMa0796 at 435.330 kb on - strand, within SMa0796 at 435.330 kb on - strand, within SMa0796 at 435.333 kb on + strand, within SMa0796 at 435.334 kb on - strand, within SMa0796 at 435.420 kb on + strand at 435.519 kb on - strand at 435.519 kb on - strand at 435.545 kb on - strand, within SMa0797 at 435.655 kb on + strand, within SMa0797 at 435.656 kb on - strand, within SMa0797 at 435.665 kb on + strand, within SMa0797 at 435.772 kb on + strand, within SMa0797 at 435.822 kb on - strand at 435.866 kb on + strand at 435.866 kb on + strand at 435.872 kb on - strand at 435.872 kb on - strand at 435.905 kb on + strand at 435.905 kb on + strand at 435.905 kb on + strand at 435.906 kb on - strand at 435.906 kb on - strand at 435.906 kb on - strand at 436.062 kb on - strand, within SMa0799 at 436.062 kb on - strand, within SMa0799 at 436.062 kb on - strand, within SMa0799 at 436.062 kb on - strand, within SMa0799 at 436.207 kb on - strand, within SMa0799 at 436.225 kb on - strand, within SMa0799 at 436.227 kb on + strand, within SMa0799 at 436.227 kb on + strand, within SMa0799 at 436.227 kb on + strand, within SMa0799 at 436.228 kb on - strand, within SMa0799 at 436.228 kb on - strand, within SMa0799 at 436.329 kb on + strand, within SMa0799 at 436.330 kb on - strand, within SMa0799 at 436.381 kb on + strand, within SMa0799 at 436.443 kb on - strand, within SMa0799 at 436.517 kb on + strand, within SMa0799 at 436.657 kb on + strand, within SMa0799
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 434,693 - SMa0796 0.45 +1.0 434,693 - SMa0796 0.45 +0.0 434,693 - SMa0796 0.45 -0.0 434,726 + SMa0796 0.48 -0.2 434,726 + SMa0796 0.48 -0.5 434,728 + SMa0796 0.48 +1.0 434,728 + SMa0796 0.48 +0.3 434,728 + SMa0796 0.48 +0.0 434,728 + SMa0796 0.48 +0.1 434,728 + +0.6 434,728 + SMa0796 0.48 -0.7 434,728 + SMa0796 0.48 +0.8 434,728 + SMa0796 0.48 +0.0 434,729 - SMa0796 0.48 +1.0 434,729 - SMa0796 0.48 +1.4 434,731 + SMa0796 0.48 -0.2 435,105 + SMa0796 0.74 +0.8 435,105 + SMa0796 0.74 -0.7 435,105 + SMa0796 0.74 -0.2 435,329 + SMa0796 0.89 -0.1 435,330 - SMa0796 0.89 -0.2 435,330 - SMa0796 0.89 +0.6 435,333 + SMa0796 0.89 +0.9 435,334 - SMa0796 0.89 +0.7 435,420 + +0.4 435,519 - +0.6 435,519 - -0.6 435,545 - SMa0797 0.15 +0.1 435,655 + SMa0797 0.48 +1.1 435,656 - SMa0797 0.49 -0.4 435,665 + SMa0797 0.51 +1.9 435,772 + SMa0797 0.84 +2.0 435,822 - -1.1 435,866 + -1.5 435,866 + +0.0 435,872 - +0.2 435,872 - -0.1 435,905 + -0.8 435,905 + -0.4 435,905 + +0.3 435,906 - +0.0 435,906 - -0.1 435,906 - +0.4 436,062 - SMa0799 0.20 +0.1 436,062 - SMa0799 0.20 +0.2 436,062 - SMa0799 0.20 -0.7 436,062 - SMa0799 0.20 +0.0 436,207 - SMa0799 0.34 +0.1 436,225 - SMa0799 0.36 -0.4 436,227 + SMa0799 0.36 -0.8 436,227 + SMa0799 0.36 -0.2 436,227 + SMa0799 0.36 -0.4 436,228 - SMa0799 0.36 -0.1 436,228 - SMa0799 0.36 -0.6 436,329 + SMa0799 0.46 -0.8 436,330 - SMa0799 0.46 -0.4 436,381 + SMa0799 0.51 -0.3 436,443 - SMa0799 0.58 +1.0 436,517 + SMa0799 0.65 +0.0 436,657 + SMa0799 0.79 -0.3
Or see this region's nucleotide sequence