Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0709 and SMa0710 overlap by 26 nucleotides SMa0710 and SMa0711 are separated by 11 nucleotides SMa0711 and SMa0713 are separated by 1 nucleotides
SMa0709: SMa0709 - ABC transporter substrate-binding protein, at 384,120 to 385,385
SMa0709
SMa0710: SMa0710 - ABC transporter permease, at 385,360 to 386,373
SMa0710
SMa0711: SMa0711 - ABC transporter permease, at 386,385 to 387,215
SMa0711
SMa0713: SMa0713 - ABC transporter ATP-binding protein, at 387,217 to 387,810
SMa0713
Position (kb) 385
386
387 Strain fitness (log2 ratio) -2
-1
0
1
2 at 384.383 kb on + strand, within SMa0709 at 384.425 kb on + strand, within SMa0709 at 384.518 kb on + strand, within SMa0709 at 384.543 kb on + strand, within SMa0709 at 384.544 kb on - strand, within SMa0709 at 384.565 kb on - strand, within SMa0709 at 384.612 kb on + strand, within SMa0709 at 384.720 kb on + strand, within SMa0709 at 384.720 kb on + strand, within SMa0709 at 384.721 kb on - strand, within SMa0709 at 384.721 kb on - strand, within SMa0709 at 384.721 kb on - strand, within SMa0709 at 384.724 kb on + strand, within SMa0709 at 384.725 kb on - strand, within SMa0709 at 384.725 kb on - strand, within SMa0709 at 384.725 kb on - strand, within SMa0709 at 384.725 kb on - strand, within SMa0709 at 384.741 kb on + strand, within SMa0709 at 384.793 kb on + strand, within SMa0709 at 384.793 kb on + strand, within SMa0709 at 384.793 kb on + strand, within SMa0709 at 384.794 kb on - strand, within SMa0709 at 384.971 kb on + strand, within SMa0709 at 385.318 kb on + strand at 385.318 kb on + strand at 385.319 kb on - strand at 385.319 kb on - strand at 385.383 kb on + strand at 385.383 kb on + strand at 385.383 kb on + strand at 385.384 kb on - strand at 385.429 kb on + strand at 385.430 kb on - strand at 385.430 kb on - strand at 385.475 kb on + strand, within SMa0710 at 385.475 kb on + strand, within SMa0710 at 385.476 kb on - strand, within SMa0710 at 385.476 kb on - strand, within SMa0710 at 385.476 kb on - strand, within SMa0710 at 385.522 kb on + strand, within SMa0710 at 385.522 kb on + strand, within SMa0710 at 385.670 kb on + strand, within SMa0710 at 386.002 kb on + strand, within SMa0710 at 386.059 kb on + strand, within SMa0710 at 386.059 kb on + strand, within SMa0710 at 386.251 kb on + strand, within SMa0710 at 386.251 kb on + strand, within SMa0710 at 386.306 kb on + strand at 386.352 kb on + strand at 386.352 kb on + strand at 386.368 kb on + strand at 386.368 kb on + strand at 386.368 kb on + strand at 386.368 kb on + strand at 386.368 kb on + strand at 386.369 kb on - strand at 386.369 kb on - strand at 386.372 kb on - strand at 386.372 kb on - strand at 386.372 kb on - strand at 386.372 kb on - strand at 386.459 kb on + strand at 386.459 kb on + strand at 386.463 kb on + strand at 386.463 kb on + strand at 386.463 kb on + strand at 386.464 kb on - strand at 386.464 kb on - strand at 386.588 kb on - strand, within SMa0711 at 386.626 kb on + strand, within SMa0711 at 386.627 kb on - strand, within SMa0711 at 386.661 kb on + strand, within SMa0711 at 386.662 kb on - strand, within SMa0711 at 386.969 kb on - strand, within SMa0711 at 386.969 kb on - strand, within SMa0711 at 386.985 kb on + strand, within SMa0711 at 386.985 kb on + strand, within SMa0711 at 387.012 kb on + strand, within SMa0711 at 387.012 kb on + strand, within SMa0711 at 387.013 kb on - strand, within SMa0711 at 387.013 kb on - strand, within SMa0711 at 387.019 kb on - strand, within SMa0711 at 387.019 kb on - strand, within SMa0711 at 387.019 kb on - strand at 387.159 kb on + strand at 387.159 kb on + strand at 387.160 kb on - strand at 387.160 kb on - strand at 387.177 kb on + strand at 387.245 kb on - strand at 387.314 kb on + strand, within SMa0713
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 384,383 + SMa0709 0.21 -0.6 384,425 + SMa0709 0.24 +0.7 384,518 + SMa0709 0.31 -0.0 384,543 + SMa0709 0.33 -1.3 384,544 - SMa0709 0.33 -0.2 384,565 - SMa0709 0.35 -0.2 384,612 + SMa0709 0.39 -0.5 384,720 + SMa0709 0.47 -0.2 384,720 + SMa0709 0.47 +0.6 384,721 - SMa0709 0.47 -1.1 384,721 - SMa0709 0.47 +0.6 384,721 - SMa0709 0.47 -0.2 384,724 + SMa0709 0.48 -0.3 384,725 - SMa0709 0.48 -0.7 384,725 - SMa0709 0.48 -0.7 384,725 - SMa0709 0.48 -0.3 384,725 - SMa0709 0.48 -0.7 384,741 + SMa0709 0.49 +0.8 384,793 + SMa0709 0.53 +0.1 384,793 + SMa0709 0.53 -0.5 384,793 + SMa0709 0.53 -0.2 384,794 - SMa0709 0.53 +0.7 384,971 + SMa0709 0.67 -0.9 385,318 + -0.2 385,318 + +0.2 385,319 - -1.5 385,319 - -0.7 385,383 + +0.2 385,383 + +0.8 385,383 + -0.2 385,384 - -0.1 385,429 + -0.4 385,430 - -0.4 385,430 - +0.2 385,475 + SMa0710 0.11 +0.1 385,475 + SMa0710 0.11 +0.8 385,476 - SMa0710 0.11 +0.0 385,476 - SMa0710 0.11 +0.2 385,476 - SMa0710 0.11 +1.0 385,522 + SMa0710 0.16 +2.0 385,522 + SMa0710 0.16 -0.2 385,670 + SMa0710 0.31 +0.8 386,002 + SMa0710 0.63 -0.5 386,059 + SMa0710 0.69 +1.1 386,059 + SMa0710 0.69 -0.2 386,251 + SMa0710 0.88 +1.2 386,251 + SMa0710 0.88 +0.1 386,306 + -0.6 386,352 + +0.6 386,352 + -0.4 386,368 + +0.3 386,368 + +0.6 386,368 + -0.2 386,368 + -0.5 386,368 + +0.5 386,369 - -0.2 386,369 - +0.4 386,372 - -2.2 386,372 - -0.7 386,372 - -0.5 386,372 - +0.1 386,459 + +0.1 386,459 + +1.0 386,463 + +0.1 386,463 + +0.1 386,463 + -0.6 386,464 - -0.2 386,464 - -0.4 386,588 - SMa0711 0.24 -0.9 386,626 + SMa0711 0.29 -0.7 386,627 - SMa0711 0.29 -0.5 386,661 + SMa0711 0.33 +0.8 386,662 - SMa0711 0.33 +0.0 386,969 - SMa0711 0.70 -0.3 386,969 - SMa0711 0.70 -0.1 386,985 + SMa0711 0.72 -0.5 386,985 + SMa0711 0.72 +1.6 387,012 + SMa0711 0.75 +0.3 387,012 + SMa0711 0.75 +0.6 387,013 - SMa0711 0.76 -0.1 387,013 - SMa0711 0.76 -0.1 387,019 - SMa0711 0.76 -0.8 387,019 - SMa0711 0.76 +0.4 387,019 - +0.0 387,159 + -1.2 387,159 + +0.5 387,160 - +0.5 387,160 - -0.6 387,177 + -0.1 387,245 - +0.0 387,314 + SMa0713 0.16 -0.4
Or see this region's nucleotide sequence