Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0617 and SMa0620 are separated by 218 nucleotides SMa0620 and SMa0621 are separated by 2 nucleotides
SMa0617: SMa0617 - FixP3 Diheme c-type cytochrome, at 329,568 to 330,449
SMa0617
SMa0620: SMa0620 - hypothetical protein, at 330,668 to 331,474
SMa0620
SMa0621: SMa0621 - FixI2 E1-E2 type cation ATPase, at 331,477 to 333,744
SMa0621
Position (kb) 330
331
332 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 329.745 kb on + strand, within SMa0617 at 329.745 kb on + strand, within SMa0617 at 329.745 kb on + strand, within SMa0617 at 329.746 kb on - strand, within SMa0617 at 329.747 kb on + strand, within SMa0617 at 329.747 kb on + strand, within SMa0617 at 329.843 kb on + strand, within SMa0617 at 329.844 kb on - strand, within SMa0617 at 329.863 kb on + strand, within SMa0617 at 329.863 kb on + strand, within SMa0617 at 329.863 kb on + strand, within SMa0617 at 329.864 kb on - strand, within SMa0617 at 329.970 kb on + strand, within SMa0617 at 329.970 kb on + strand, within SMa0617 at 329.970 kb on + strand, within SMa0617 at 330.141 kb on + strand, within SMa0617 at 330.142 kb on - strand, within SMa0617 at 330.142 kb on - strand, within SMa0617 at 330.168 kb on + strand, within SMa0617 at 330.307 kb on - strand, within SMa0617 at 330.327 kb on - strand, within SMa0617 at 330.362 kb on + strand at 330.362 kb on + strand at 330.363 kb on - strand at 330.363 kb on - strand at 330.417 kb on + strand at 330.417 kb on + strand at 330.546 kb on - strand at 330.546 kb on - strand at 330.667 kb on + strand at 330.667 kb on + strand at 330.667 kb on + strand at 330.668 kb on - strand at 330.717 kb on + strand at 330.717 kb on + strand at 330.717 kb on + strand at 330.810 kb on - strand, within SMa0620 at 330.831 kb on - strand, within SMa0620 at 330.831 kb on - strand, within SMa0620 at 330.925 kb on + strand, within SMa0620 at 330.925 kb on + strand, within SMa0620 at 330.960 kb on - strand, within SMa0620 at 331.109 kb on + strand, within SMa0620 at 331.110 kb on - strand, within SMa0620 at 331.153 kb on + strand, within SMa0620 at 331.371 kb on + strand, within SMa0620 at 331.457 kb on + strand at 331.495 kb on - strand at 331.495 kb on - strand at 331.495 kb on - strand at 331.774 kb on + strand, within SMa0621 at 331.972 kb on + strand, within SMa0621 at 331.991 kb on - strand, within SMa0621 at 332.084 kb on - strand, within SMa0621
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 329,745 + SMa0617 0.20 +0.1 329,745 + SMa0617 0.20 -0.1 329,745 + SMa0617 0.20 -0.5 329,746 - SMa0617 0.20 +0.1 329,747 + SMa0617 0.20 +1.7 329,747 + SMa0617 0.20 -0.1 329,843 + SMa0617 0.31 +0.7 329,844 - SMa0617 0.31 +4.0 329,863 + SMa0617 0.33 -0.7 329,863 + SMa0617 0.33 +0.4 329,863 + SMa0617 0.33 +0.0 329,864 - SMa0617 0.34 -0.2 329,970 + SMa0617 0.46 +0.9 329,970 + SMa0617 0.46 +1.7 329,970 + SMa0617 0.46 -0.5 330,141 + SMa0617 0.65 +0.3 330,142 - SMa0617 0.65 +0.3 330,142 - SMa0617 0.65 -0.0 330,168 + SMa0617 0.68 -0.2 330,307 - SMa0617 0.84 -0.2 330,327 - SMa0617 0.86 -0.5 330,362 + +0.5 330,362 + +0.5 330,363 - -0.1 330,363 - -1.8 330,417 + -0.3 330,417 + +0.2 330,546 - +0.9 330,546 - +0.4 330,667 + -0.3 330,667 + -0.1 330,667 + -0.6 330,668 - -0.1 330,717 + -0.4 330,717 + -0.2 330,717 + -0.2 330,810 - SMa0620 0.18 +0.2 330,831 - SMa0620 0.20 -0.4 330,831 - SMa0620 0.20 -0.7 330,925 + SMa0620 0.32 +0.1 330,925 + SMa0620 0.32 -0.3 330,960 - SMa0620 0.36 -1.1 331,109 + SMa0620 0.55 +1.6 331,110 - SMa0620 0.55 -2.4 331,153 + SMa0620 0.60 -1.0 331,371 + SMa0620 0.87 -0.3 331,457 + +1.1 331,495 - +0.2 331,495 - +1.6 331,495 - -3.3 331,774 + SMa0621 0.13 +0.6 331,972 + SMa0621 0.22 +0.2 331,991 - SMa0621 0.23 +0.4 332,084 - SMa0621 0.27 +0.1
Or see this region's nucleotide sequence