Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21110 and SM_b21111 overlap by 4 nucleotides SM_b21111 and SM_b21112 are separated by 22 nucleotides SM_b21112 and SM_b21113 are separated by 123 nucleotides
SM_b21110: SM_b21110 - dehydratase involved in L-fucose catabolism <small>(from data)</small>, at 751,761 to 752,222
_b21110
SM_b21111: SM_b21111 - oxidoreductase, RED superfamily protein, at 752,219 to 752,953
_b21111
SM_b21112: SM_b21112 - L-2,4-diketo-3-deoxyrhamnonate hydrolase; 2,4-dioxopentanoate hydrolase <small>(from data)</small>, at 752,976 to 753,821
_b21112
SM_b21113: SM_b21113 - hypothetical protein, at 753,945 to 755,222
_b21113
Position (kb) 752
753
754 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 752.008 kb on - strand, within SM_b21110 at 752.008 kb on - strand, within SM_b21110 at 752.054 kb on + strand, within SM_b21110 at 752.055 kb on - strand, within SM_b21110 at 752.213 kb on + strand at 752.213 kb on + strand at 752.214 kb on - strand at 752.254 kb on - strand at 752.274 kb on + strand at 752.274 kb on + strand at 752.275 kb on - strand at 752.275 kb on - strand at 752.714 kb on + strand, within SM_b21111 at 752.714 kb on + strand, within SM_b21111 at 752.715 kb on - strand at 752.718 kb on + strand, within SM_b21111 at 752.718 kb on + strand, within SM_b21111 at 752.805 kb on - strand, within SM_b21111 at 752.805 kb on - strand, within SM_b21111 at 752.889 kb on - strand at 752.889 kb on - strand at 752.907 kb on - strand at 752.907 kb on - strand at 752.925 kb on - strand at 752.992 kb on - strand at 753.064 kb on + strand, within SM_b21112 at 753.213 kb on + strand, within SM_b21112 at 753.213 kb on + strand, within SM_b21112 at 753.384 kb on + strand, within SM_b21112 at 753.385 kb on - strand, within SM_b21112 at 753.423 kb on + strand, within SM_b21112 at 753.423 kb on + strand, within SM_b21112 at 753.628 kb on - strand, within SM_b21112 at 753.651 kb on + strand, within SM_b21112 at 753.651 kb on + strand, within SM_b21112 at 753.687 kb on - strand, within SM_b21112 at 753.776 kb on - strand at 753.824 kb on + strand at 753.824 kb on + strand at 753.825 kb on - strand at 753.932 kb on + strand at 753.932 kb on + strand at 753.933 kb on - strand at 753.933 kb on - strand at 754.039 kb on - strand at 754.050 kb on + strand at 754.050 kb on + strand at 754.051 kb on - strand at 754.051 kb on - strand at 754.051 kb on - strand at 754.108 kb on + strand, within SM_b21113 at 754.126 kb on + strand, within SM_b21113 at 754.126 kb on + strand, within SM_b21113 at 754.126 kb on + strand, within SM_b21113 at 754.126 kb on + strand, within SM_b21113 at 754.127 kb on - strand, within SM_b21113 at 754.127 kb on - strand, within SM_b21113 at 754.127 kb on - strand, within SM_b21113 at 754.127 kb on - strand, within SM_b21113 at 754.127 kb on - strand, within SM_b21113 at 754.289 kb on - strand, within SM_b21113 at 754.395 kb on + strand, within SM_b21113 at 754.395 kb on + strand, within SM_b21113 at 754.396 kb on - strand, within SM_b21113 at 754.503 kb on + strand, within SM_b21113 at 754.503 kb on + strand, within SM_b21113 at 754.503 kb on + strand, within SM_b21113 at 754.504 kb on - strand, within SM_b21113 at 754.671 kb on + strand, within SM_b21113 at 754.672 kb on - strand, within SM_b21113
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 752,008 - SM_b21110 0.53 -0.2 752,008 - SM_b21110 0.53 -0.9 752,054 + SM_b21110 0.63 +0.8 752,055 - SM_b21110 0.64 -0.4 752,213 + -0.5 752,213 + -0.5 752,214 - -0.0 752,254 - -0.4 752,274 + -0.1 752,274 + -0.2 752,275 - -0.6 752,275 - +0.1 752,714 + SM_b21111 0.67 +0.7 752,714 + SM_b21111 0.67 +1.5 752,715 - +0.5 752,718 + SM_b21111 0.68 -1.3 752,718 + SM_b21111 0.68 -0.2 752,805 - SM_b21111 0.80 +0.2 752,805 - SM_b21111 0.80 -0.2 752,889 - +1.2 752,889 - -0.4 752,907 - -0.3 752,907 - +0.9 752,925 - -0.4 752,992 - -0.0 753,064 + SM_b21112 0.10 -0.1 753,213 + SM_b21112 0.28 -0.9 753,213 + SM_b21112 0.28 -0.6 753,384 + SM_b21112 0.48 +0.1 753,385 - SM_b21112 0.48 +0.2 753,423 + SM_b21112 0.53 -2.3 753,423 + SM_b21112 0.53 -0.5 753,628 - SM_b21112 0.77 -0.5 753,651 + SM_b21112 0.80 -0.9 753,651 + SM_b21112 0.80 -0.4 753,687 - SM_b21112 0.84 -1.0 753,776 - +0.3 753,824 + -0.3 753,824 + +0.3 753,825 - +0.5 753,932 + -0.3 753,932 + -0.8 753,933 - +0.3 753,933 - -0.6 754,039 - -0.2 754,050 + +0.2 754,050 + +0.4 754,051 - +0.5 754,051 - +0.1 754,051 - -0.2 754,108 + SM_b21113 0.13 -0.1 754,126 + SM_b21113 0.14 -0.0 754,126 + SM_b21113 0.14 -0.1 754,126 + SM_b21113 0.14 +1.5 754,126 + SM_b21113 0.14 -1.7 754,127 - SM_b21113 0.14 +0.1 754,127 - SM_b21113 0.14 +0.3 754,127 - SM_b21113 0.14 +0.2 754,127 - SM_b21113 0.14 +0.5 754,127 - SM_b21113 0.14 +0.1 754,289 - SM_b21113 0.27 -0.3 754,395 + SM_b21113 0.35 +0.2 754,395 + SM_b21113 0.35 -0.1 754,396 - SM_b21113 0.35 -0.1 754,503 + SM_b21113 0.44 +0.2 754,503 + SM_b21113 0.44 -1.5 754,503 + SM_b21113 0.44 +0.2 754,504 - SM_b21113 0.44 -2.8 754,671 + SM_b21113 0.57 +0.6 754,672 - SM_b21113 0.57 -0.0
Or see this region's nucleotide sequence