Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20549 and SM_b20550 are separated by 167 nucleotides SM_b20550 and SM_b20551 are separated by 173 nucleotides
SM_b20549: SM_b20549 - hypothetical protein, at 576,048 to 576,365
_b20549
SM_b20550: SM_b20550 - hypothetical protein, at 576,533 to 576,778
_b20550
SM_b20551: SM_b20551 - hypothetical protein, at 576,952 to 577,398
_b20551
Position (kb) 576
577 Strain fitness (log2 ratio) -2
-1
0
1
2 at 575.569 kb on + strand at 575.570 kb on - strand at 575.570 kb on - strand at 575.574 kb on - strand at 575.574 kb on - strand at 575.783 kb on + strand at 575.783 kb on + strand at 575.783 kb on + strand at 575.784 kb on - strand at 575.890 kb on + strand at 575.890 kb on + strand at 575.890 kb on + strand at 575.891 kb on - strand at 575.999 kb on + strand at 576.078 kb on + strand at 576.078 kb on + strand at 576.079 kb on - strand at 576.079 kb on - strand at 576.079 kb on - strand at 576.151 kb on - strand, within SM_b20549 at 576.151 kb on - strand, within SM_b20549 at 576.151 kb on - strand, within SM_b20549 at 576.151 kb on - strand, within SM_b20549 at 576.406 kb on + strand at 576.407 kb on - strand at 576.407 kb on - strand at 576.407 kb on - strand at 576.546 kb on + strand at 576.572 kb on + strand, within SM_b20550 at 576.602 kb on - strand, within SM_b20550 at 576.605 kb on + strand, within SM_b20550 at 576.605 kb on + strand, within SM_b20550 at 576.605 kb on + strand, within SM_b20550 at 576.605 kb on + strand, within SM_b20550 at 576.605 kb on + strand, within SM_b20550 at 576.605 kb on + strand, within SM_b20550 at 576.605 kb on + strand, within SM_b20550 at 576.606 kb on - strand, within SM_b20550 at 576.648 kb on + strand, within SM_b20550 at 576.722 kb on + strand at 576.722 kb on + strand, within SM_b20550 at 576.722 kb on + strand, within SM_b20550 at 576.722 kb on + strand, within SM_b20550 at 576.772 kb on + strand at 576.779 kb on + strand at 577.081 kb on - strand, within SM_b20551 at 577.100 kb on + strand, within SM_b20551 at 577.100 kb on + strand at 577.100 kb on + strand, within SM_b20551 at 577.100 kb on + strand, within SM_b20551 at 577.100 kb on + strand, within SM_b20551 at 577.101 kb on - strand, within SM_b20551 at 577.101 kb on - strand, within SM_b20551 at 577.101 kb on - strand, within SM_b20551 at 577.101 kb on - strand, within SM_b20551 at 577.129 kb on + strand, within SM_b20551 at 577.129 kb on + strand, within SM_b20551 at 577.129 kb on + strand, within SM_b20551 at 577.130 kb on - strand, within SM_b20551 at 577.130 kb on - strand, within SM_b20551 at 577.178 kb on + strand, within SM_b20551 at 577.179 kb on - strand, within SM_b20551 at 577.179 kb on - strand, within SM_b20551 at 577.189 kb on - strand, within SM_b20551 at 577.270 kb on + strand, within SM_b20551 at 577.409 kb on + strand at 577.409 kb on + strand at 577.410 kb on - strand at 577.410 kb on - strand at 577.410 kb on - strand at 577.410 kb on - strand at 577.460 kb on - strand at 577.524 kb on - strand at 577.561 kb on + strand at 577.561 kb on + strand at 577.562 kb on - strand at 577.648 kb on - strand at 577.718 kb on + strand at 577.718 kb on + strand at 577.718 kb on + strand at 577.719 kb on - strand at 577.719 kb on - strand at 577.720 kb on + strand at 577.720 kb on + strand at 577.720 kb on + strand at 577.720 kb on + strand at 577.721 kb on - strand at 577.722 kb on + strand at 577.722 kb on + strand at 577.722 kb on + strand at 577.723 kb on - strand at 577.723 kb on - strand at 577.723 kb on - strand at 577.742 kb on + strand at 577.742 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 575,569 + -0.1 575,570 - -0.4 575,570 - +0.6 575,574 - +0.4 575,574 - +0.2 575,783 + -0.5 575,783 + +0.1 575,783 + +1.3 575,784 - -0.8 575,890 + -0.1 575,890 + -0.1 575,890 + -1.0 575,891 - -1.0 575,999 + -0.3 576,078 + +0.7 576,078 + +0.1 576,079 - +0.5 576,079 - -0.4 576,079 - +0.6 576,151 - SM_b20549 0.32 -2.5 576,151 - SM_b20549 0.32 +0.3 576,151 - SM_b20549 0.32 -0.8 576,151 - SM_b20549 0.32 -0.4 576,406 + -0.8 576,407 - +0.7 576,407 - -0.5 576,407 - +0.7 576,546 + -0.5 576,572 + SM_b20550 0.16 +0.4 576,602 - SM_b20550 0.28 +0.3 576,605 + SM_b20550 0.29 +0.7 576,605 + SM_b20550 0.29 +0.0 576,605 + SM_b20550 0.29 -0.8 576,605 + SM_b20550 0.29 +0.6 576,605 + SM_b20550 0.29 -0.0 576,605 + SM_b20550 0.29 +0.4 576,605 + SM_b20550 0.29 -0.0 576,606 - SM_b20550 0.30 +0.3 576,648 + SM_b20550 0.47 +0.4 576,722 + +2.2 576,722 + SM_b20550 0.77 +0.2 576,722 + SM_b20550 0.77 +0.2 576,722 + SM_b20550 0.77 +0.6 576,772 + +0.2 576,779 + +0.8 577,081 - SM_b20551 0.29 -0.2 577,100 + SM_b20551 0.33 +1.5 577,100 + -0.1 577,100 + SM_b20551 0.33 +0.3 577,100 + SM_b20551 0.33 +0.5 577,100 + SM_b20551 0.33 +0.9 577,101 - SM_b20551 0.33 +0.8 577,101 - SM_b20551 0.33 +0.1 577,101 - SM_b20551 0.33 +1.2 577,101 - SM_b20551 0.33 +1.1 577,129 + SM_b20551 0.40 +0.1 577,129 + SM_b20551 0.40 +0.0 577,129 + SM_b20551 0.40 +0.3 577,130 - SM_b20551 0.40 +0.6 577,130 - SM_b20551 0.40 -0.3 577,178 + SM_b20551 0.51 +1.0 577,179 - SM_b20551 0.51 +0.0 577,179 - SM_b20551 0.51 +0.2 577,189 - SM_b20551 0.53 +0.1 577,270 + SM_b20551 0.71 +1.1 577,409 + +0.6 577,409 + -0.3 577,410 - -0.5 577,410 - -1.2 577,410 - +0.2 577,410 - +0.6 577,460 - +0.1 577,524 - +0.1 577,561 + +0.8 577,561 + -0.1 577,562 - +0.3 577,648 - +0.2 577,718 + -1.2 577,718 + -0.3 577,718 + +0.4 577,719 - -0.6 577,719 - -0.1 577,720 + +0.2 577,720 + -1.3 577,720 + +0.0 577,720 + +0.2 577,721 - +0.5 577,722 + -0.7 577,722 + -0.3 577,722 + +1.5 577,723 - +0.8 577,723 - -0.4 577,723 - +0.1 577,742 + +0.6 577,742 + -1.5
Or see this region's nucleotide sequence