Strain Fitness in Sinorhizobium meliloti 1021 around SMc00650

Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00651 and SMc00650 are separated by 148 nucleotidesSMc00650 and SMc00649 are separated by 230 nucleotides SMc00651: SMc00651 - hypothetical protein, at 2,924,797 to 2,925,399 SMc00651 SMc00650: SMc00650 - hypothetical protein, at 2,925,548 to 2,926,630 SMc00650 SMc00649: SMc00649 - tRNA/rRNA methyltransferase, at 2,926,861 to 2,927,688 SMc00649 Position (kb) 2925 2926 2927Strain fitness (log2 ratio) -2 -1 0 1at 2924.548 kb on - strandat 2924.592 kb on + strandat 2924.675 kb on + strandat 2924.675 kb on + strandat 2924.675 kb on + strandat 2925.457 kb on + strandat 2925.487 kb on + strandat 2926.047 kb on + strand, within SMc00650at 2926.047 kb on + strand, within SMc00650at 2926.901 kb on - strandat 2927.192 kb on + strand, within SMc00649at 2927.192 kb on + strand, within SMc00649at 2927.192 kb on + strand, within SMc00649at 2927.271 kb on + strand, within SMc00649at 2927.271 kb on + strand, within SMc00649at 2927.287 kb on + strand, within SMc00649at 2927.323 kb on + strand, within SMc00649at 2927.324 kb on - strand, within SMc00649at 2927.438 kb on + strand, within SMc00649at 2927.439 kb on - strand, within SMc00649at 2927.439 kb on - strand, within SMc00649

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI
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2,924,548 - -1.0
2,924,592 + +0.3
2,924,675 + +0.2
2,924,675 + -0.0
2,924,675 + -0.1
2,925,457 + -0.4
2,925,487 + -0.1
2,926,047 + SMc00650 0.46 -0.4
2,926,047 + SMc00650 0.46 -1.9
2,926,901 - -0.1
2,927,192 + SMc00649 0.40 +0.0
2,927,192 + SMc00649 0.40 -0.7
2,927,192 + SMc00649 0.40 -0.5
2,927,271 + SMc00649 0.50 +0.1
2,927,271 + SMc00649 0.50 +0.6
2,927,287 + SMc00649 0.51 +0.2
2,927,323 + SMc00649 0.56 -0.2
2,927,324 - SMc00649 0.56 -0.3
2,927,438 + SMc00649 0.70 +0.4
2,927,439 - SMc00649 0.70 -1.2
2,927,439 - SMc00649 0.70 -0.3

Or see this region's nucleotide sequence