Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00420 and SMc00421 are separated by 629 nucleotides SMc00421 and SMc00422 are separated by 138 nucleotides SMc00422 and SMc00423 are separated by 162 nucleotides
SMc00420: SMc00420 - hypothetical protein, at 368,205 to 369,737
SMc00420
SMc00421: SMc00421 - O-acetylserine sulfhydrylase A, at 370,367 to 371,335
SMc00421
SMc00422: SMc00422 - amino acid efflux protein, at 371,474 to 372,091
SMc00422
SMc00423: SMc00423 - amino acid efflux protein, at 372,254 to 372,886
SMc00423
Position (kb) 370
371
372 Strain fitness (log2 ratio) -1
0
1
2
3 at 369.566 kb on - strand, within SMc00420 at 369.610 kb on - strand at 369.700 kb on - strand at 369.735 kb on + strand at 369.819 kb on - strand at 369.819 kb on - strand at 369.819 kb on - strand at 369.819 kb on - strand at 369.849 kb on - strand at 370.173 kb on - strand at 370.198 kb on + strand at 370.198 kb on + strand at 370.198 kb on + strand at 370.198 kb on + strand at 370.198 kb on + strand at 370.198 kb on + strand at 370.210 kb on + strand at 370.219 kb on + strand at 370.260 kb on - strand at 370.369 kb on - strand at 370.369 kb on - strand at 370.405 kb on - strand at 370.553 kb on + strand, within SMc00421 at 370.554 kb on - strand, within SMc00421 at 370.571 kb on + strand, within SMc00421 at 370.572 kb on - strand, within SMc00421 at 370.590 kb on + strand, within SMc00421 at 370.591 kb on - strand, within SMc00421 at 370.721 kb on - strand, within SMc00421 at 371.069 kb on + strand, within SMc00421 at 371.069 kb on + strand, within SMc00421 at 371.070 kb on - strand, within SMc00421 at 371.070 kb on - strand, within SMc00421 at 371.070 kb on - strand, within SMc00421 at 371.077 kb on + strand, within SMc00421 at 371.376 kb on + strand at 371.377 kb on - strand at 371.383 kb on + strand at 371.384 kb on - strand at 371.384 kb on - strand at 371.384 kb on - strand at 371.496 kb on + strand at 371.496 kb on + strand at 371.497 kb on - strand at 371.596 kb on + strand, within SMc00422 at 371.596 kb on + strand, within SMc00422 at 371.597 kb on - strand, within SMc00422 at 371.597 kb on - strand, within SMc00422 at 371.597 kb on - strand, within SMc00422 at 371.597 kb on - strand, within SMc00422 at 371.598 kb on + strand, within SMc00422 at 371.598 kb on + strand, within SMc00422 at 371.599 kb on - strand, within SMc00422 at 371.707 kb on - strand, within SMc00422 at 371.836 kb on + strand, within SMc00422 at 371.837 kb on - strand, within SMc00422 at 371.838 kb on + strand, within SMc00422 at 371.839 kb on - strand, within SMc00422 at 371.848 kb on - strand, within SMc00422 at 371.934 kb on + strand, within SMc00422 at 371.934 kb on + strand, within SMc00422 at 371.934 kb on + strand, within SMc00422 at 371.935 kb on - strand, within SMc00422 at 371.935 kb on - strand, within SMc00422 at 372.065 kb on - strand at 372.107 kb on + strand at 372.219 kb on + strand at 372.219 kb on + strand at 372.220 kb on - strand at 372.332 kb on + strand, within SMc00423 at 372.333 kb on - strand, within SMc00423 at 372.333 kb on - strand, within SMc00423
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 369,566 - SMc00420 0.89 -0.9 369,610 - -0.3 369,700 - -0.5 369,735 + +0.0 369,819 - -0.7 369,819 - +0.3 369,819 - +1.6 369,819 - +0.6 369,849 - +0.3 370,173 - -0.2 370,198 + +1.8 370,198 + +0.6 370,198 + +0.6 370,198 + -0.5 370,198 + -0.2 370,198 + -0.3 370,210 + +0.1 370,219 + +0.4 370,260 - +0.4 370,369 - +0.4 370,369 - +0.3 370,405 - +0.3 370,553 + SMc00421 0.19 +0.4 370,554 - SMc00421 0.19 +0.0 370,571 + SMc00421 0.21 +1.1 370,572 - SMc00421 0.21 -0.6 370,590 + SMc00421 0.23 -1.0 370,591 - SMc00421 0.23 +0.4 370,721 - SMc00421 0.37 +0.3 371,069 + SMc00421 0.72 +1.0 371,069 + SMc00421 0.72 +1.0 371,070 - SMc00421 0.73 +0.7 371,070 - SMc00421 0.73 +0.2 371,070 - SMc00421 0.73 -0.1 371,077 + SMc00421 0.73 +0.1 371,376 + +0.4 371,377 - -0.2 371,383 + +0.3 371,384 - -0.9 371,384 - +0.0 371,384 - +0.1 371,496 + +0.4 371,496 + +0.3 371,497 - -0.3 371,596 + SMc00422 0.20 -0.2 371,596 + SMc00422 0.20 +0.2 371,597 - SMc00422 0.20 +0.4 371,597 - SMc00422 0.20 +0.2 371,597 - SMc00422 0.20 -0.4 371,597 - SMc00422 0.20 +0.1 371,598 + SMc00422 0.20 +1.2 371,598 + SMc00422 0.20 -0.6 371,599 - SMc00422 0.20 +0.8 371,707 - SMc00422 0.38 +0.0 371,836 + SMc00422 0.59 -1.0 371,837 - SMc00422 0.59 -0.4 371,838 + SMc00422 0.59 -1.7 371,839 - SMc00422 0.59 -0.1 371,848 - SMc00422 0.61 +0.1 371,934 + SMc00422 0.74 -0.1 371,934 + SMc00422 0.74 +0.5 371,934 + SMc00422 0.74 -0.3 371,935 - SMc00422 0.75 -0.1 371,935 - SMc00422 0.75 +0.1 372,065 - +0.2 372,107 + +2.9 372,219 + -0.0 372,219 + -1.0 372,220 - -0.1 372,332 + SMc00423 0.12 +0.9 372,333 - SMc00423 0.12 -0.3 372,333 - SMc00423 0.12 +1.3
Or see this region's nucleotide sequence