Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0855 and SMa0857 overlap by 1 nucleotides SMa0857 and SMa0861 are separated by 370 nucleotides
SMa0855: SMa0855 - sulfate adenylyltransferase subunit 2, at 472,764 to 473,663
SMa0855
SMa0857: SMa0857 - bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase, at 473,663 to 475,588
SMa0857
SMa0861: SMa0861 - transposase, fragment, at 475,959 to 476,840
SMa0861
Position (kb) 473
474
475
476 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 472.748 kb on + strand at 472.749 kb on - strand at 472.749 kb on - strand at 474.617 kb on - strand, within SMa0857 at 474.617 kb on - strand, within SMa0857 at 474.617 kb on - strand, within SMa0857 at 474.617 kb on - strand, within SMa0857 at 475.137 kb on - strand, within SMa0857 at 475.444 kb on - strand at 475.483 kb on + strand at 475.485 kb on + strand at 475.485 kb on + strand at 475.486 kb on - strand at 475.486 kb on - strand at 475.586 kb on + strand at 475.587 kb on - strand at 475.600 kb on - strand at 475.655 kb on + strand at 475.655 kb on + strand at 475.655 kb on + strand at 475.657 kb on + strand at 475.672 kb on - strand at 475.725 kb on - strand at 475.794 kb on + strand at 475.795 kb on - strand at 475.815 kb on + strand at 475.815 kb on + strand at 475.816 kb on - strand at 475.816 kb on - strand at 475.896 kb on + strand at 475.896 kb on + strand at 475.897 kb on - strand at 476.179 kb on + strand, within SMa0861 at 476.379 kb on - strand, within SMa0861 at 476.379 kb on - strand, within SMa0861 at 476.485 kb on + strand, within SMa0861 at 476.496 kb on + strand, within SMa0861 at 476.497 kb on - strand, within SMa0861 at 476.497 kb on - strand, within SMa0861
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 472,748 + -0.4 472,749 - -0.9 472,749 - +1.4 474,617 - SMa0857 0.50 -1.0 474,617 - SMa0857 0.50 -0.8 474,617 - SMa0857 0.50 -0.5 474,617 - SMa0857 0.50 -0.1 475,137 - SMa0857 0.77 -0.7 475,444 - -0.7 475,483 + -0.4 475,485 + +0.1 475,485 + -0.0 475,486 - +1.6 475,486 - -0.8 475,586 + -0.2 475,587 - +0.4 475,600 - -0.4 475,655 + -0.4 475,655 + +0.6 475,655 + -0.1 475,657 + +0.1 475,672 - -0.2 475,725 - -0.8 475,794 + -1.2 475,795 - -0.3 475,815 + -0.3 475,815 + +0.5 475,816 - -0.2 475,816 - -0.4 475,896 + +0.5 475,896 + -0.9 475,897 - -0.5 476,179 + SMa0861 0.25 -0.7 476,379 - SMa0861 0.48 +0.3 476,379 - SMa0861 0.48 -0.2 476,485 + SMa0861 0.60 -5.2 476,496 + SMa0861 0.61 -0.3 476,497 - SMa0861 0.61 -1.4 476,497 - SMa0861 0.61 +0.4
Or see this region's nucleotide sequence