Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21491 and SM_b21492 are separated by 242 nucleotides SM_b21492 and SM_b21493 are separated by 33 nucleotides SM_b21493 and SM_b21494 are separated by 126 nucleotides
SM_b21491: SM_b21491 - hypothetical protein, at 1,413,437 to 1,413,967
_b21491
SM_b21492: SM_b21492 - hypothetical protein, at 1,414,210 to 1,414,872
_b21492
SM_b21493: SM_b21493 - AsnC family transcriptional regulator, at 1,414,906 to 1,415,367
_b21493
SM_b21494: SM_b21494 - ornithine cyclodeaminase, at 1,415,494 to 1,416,561
_b21494
Position (kb)
1414
1415
1416 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1414.524 kb on + strand, within SM_b21492 at 1414.526 kb on + strand, within SM_b21492 at 1414.587 kb on - strand, within SM_b21492 at 1414.676 kb on + strand, within SM_b21492 at 1414.677 kb on - strand, within SM_b21492 at 1414.677 kb on - strand, within SM_b21492 at 1414.677 kb on - strand, within SM_b21492 at 1414.677 kb on - strand, within SM_b21492 at 1414.710 kb on - strand, within SM_b21492 at 1414.848 kb on + strand at 1414.889 kb on + strand at 1415.009 kb on - strand, within SM_b21493 at 1415.009 kb on - strand, within SM_b21493 at 1415.009 kb on - strand, within SM_b21493 at 1415.010 kb on + strand, within SM_b21493 at 1415.150 kb on + strand, within SM_b21493 at 1415.719 kb on + strand, within SM_b21494 at 1415.720 kb on - strand, within SM_b21494 at 1415.731 kb on + strand, within SM_b21494 at 1415.731 kb on + strand, within SM_b21494 at 1415.732 kb on - strand, within SM_b21494 at 1415.732 kb on - strand, within SM_b21494 at 1415.829 kb on + strand, within SM_b21494 at 1416.002 kb on - strand, within SM_b21494 at 1416.124 kb on - strand, within SM_b21494 at 1416.183 kb on + strand, within SM_b21494 at 1416.184 kb on - strand, within SM_b21494 at 1416.184 kb on - strand, within SM_b21494 at 1416.224 kb on + strand, within SM_b21494
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 1,414,524 + SM_b21492 0.47 +0.4 1,414,526 + SM_b21492 0.48 +0.0 1,414,587 - SM_b21492 0.57 -0.7 1,414,676 + SM_b21492 0.70 +0.9 1,414,677 - SM_b21492 0.70 -0.3 1,414,677 - SM_b21492 0.70 -0.5 1,414,677 - SM_b21492 0.70 -0.0 1,414,677 - SM_b21492 0.70 -0.1 1,414,710 - SM_b21492 0.75 +0.5 1,414,848 + +0.6 1,414,889 + +0.6 1,415,009 - SM_b21493 0.22 +1.6 1,415,009 - SM_b21493 0.22 +2.3 1,415,009 - SM_b21493 0.22 +2.4 1,415,010 + SM_b21493 0.23 -0.5 1,415,150 + SM_b21493 0.53 -0.3 1,415,719 + SM_b21494 0.21 -0.8 1,415,720 - SM_b21494 0.21 +1.8 1,415,731 + SM_b21494 0.22 +0.3 1,415,731 + SM_b21494 0.22 +0.2 1,415,732 - SM_b21494 0.22 -3.2 1,415,732 - SM_b21494 0.22 +0.2 1,415,829 + SM_b21494 0.31 -0.5 1,416,002 - SM_b21494 0.48 +0.2 1,416,124 - SM_b21494 0.59 -0.1 1,416,183 + SM_b21494 0.65 -0.9 1,416,184 - SM_b21494 0.65 -0.3 1,416,184 - SM_b21494 0.65 -0.5 1,416,224 + SM_b21494 0.68 -0.1
Or see this region's nucleotide sequence