Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20810

Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20809 and SM_b20810 are separated by 112 nucleotidesSM_b20810 and SM_b20811 are separated by 145 nucleotidesSM_b20811 and SM_b20812 are separated by 65 nucleotides SM_b20809: SM_b20809 - arabinose-5-phosphate isomerase, at 594,508 to 595,497 _b20809 SM_b20810: SM_b20810 - membrane-located cell surface saccharide acetylase, at 595,610 to 597,643 _b20810 SM_b20811: SM_b20811 - hypothetical protein, at 597,789 to 598,109 _b20811 SM_b20812: SM_b20812 - hypothetical protein, at 598,175 to 599,221 _b20812 Position (kb) 595 596 597 598Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 594.624 kb on + strand, within SM_b20809at 594.751 kb on + strand, within SM_b20809at 594.751 kb on + strand, within SM_b20809at 594.816 kb on + strand, within SM_b20809at 594.816 kb on + strand, within SM_b20809at 594.817 kb on - strand, within SM_b20809at 594.860 kb on + strand, within SM_b20809at 594.861 kb on - strand, within SM_b20809at 594.861 kb on - strand, within SM_b20809at 594.868 kb on + strand, within SM_b20809at 594.918 kb on + strand, within SM_b20809at 594.989 kb on + strand, within SM_b20809at 595.043 kb on + strand, within SM_b20809at 595.044 kb on - strand, within SM_b20809at 595.360 kb on - strand, within SM_b20809at 595.562 kb on + strandat 595.563 kb on - strandat 595.574 kb on - strandat 595.630 kb on - strandat 595.835 kb on + strand, within SM_b20810at 595.835 kb on + strand, within SM_b20810at 595.836 kb on - strand, within SM_b20810at 595.950 kb on + strandat 595.950 kb on + strand, within SM_b20810at 595.950 kb on + strand, within SM_b20810at 595.951 kb on - strand, within SM_b20810at 595.951 kb on - strand, within SM_b20810at 595.951 kb on - strand, within SM_b20810at 595.951 kb on - strand, within SM_b20810at 595.951 kb on - strand, within SM_b20810at 596.041 kb on + strand, within SM_b20810at 596.041 kb on + strand, within SM_b20810at 596.042 kb on - strand, within SM_b20810at 596.042 kb on - strand, within SM_b20810at 596.119 kb on + strand, within SM_b20810at 596.119 kb on + strand, within SM_b20810at 596.119 kb on + strand, within SM_b20810at 596.119 kb on + strand, within SM_b20810at 596.120 kb on - strand, within SM_b20810at 596.120 kb on - strand, within SM_b20810at 596.210 kb on + strand, within SM_b20810at 596.210 kb on + strand, within SM_b20810at 596.210 kb on + strand, within SM_b20810at 596.210 kb on + strand, within SM_b20810at 596.211 kb on - strand, within SM_b20810at 596.211 kb on - strand, within SM_b20810at 596.211 kb on - strand, within SM_b20810at 596.211 kb on - strand, within SM_b20810at 596.211 kb on - strand, within SM_b20810at 596.279 kb on + strand, within SM_b20810at 596.280 kb on - strand, within SM_b20810at 596.379 kb on - strand, within SM_b20810at 596.452 kb on - strand, within SM_b20810at 596.459 kb on - strand, within SM_b20810at 596.492 kb on + strand, within SM_b20810at 596.492 kb on + strand, within SM_b20810at 596.501 kb on + strand, within SM_b20810at 596.502 kb on - strand, within SM_b20810at 596.502 kb on - strand, within SM_b20810at 596.606 kb on + strand, within SM_b20810at 596.606 kb on + strand, within SM_b20810at 596.606 kb on + strand, within SM_b20810at 596.607 kb on - strand, within SM_b20810at 596.695 kb on + strand, within SM_b20810at 596.696 kb on - strand, within SM_b20810at 596.743 kb on + strand, within SM_b20810at 596.743 kb on + strand, within SM_b20810at 596.744 kb on - strand, within SM_b20810at 596.792 kb on + strand, within SM_b20810at 596.792 kb on + strand, within SM_b20810at 596.792 kb on + strand, within SM_b20810at 596.792 kb on + strand, within SM_b20810at 596.792 kb on + strand, within SM_b20810at 596.793 kb on - strand, within SM_b20810at 596.793 kb on - strand, within SM_b20810at 596.793 kb on - strand, within SM_b20810at 596.793 kb on - strand, within SM_b20810at 596.793 kb on - strand, within SM_b20810at 596.793 kb on - strand, within SM_b20810at 596.793 kb on - strand, within SM_b20810at 596.793 kb on - strand, within SM_b20810at 596.866 kb on - strand, within SM_b20810at 596.962 kb on + strand, within SM_b20810at 596.962 kb on + strand, within SM_b20810at 596.962 kb on + strand, within SM_b20810at 596.989 kb on + strand, within SM_b20810at 596.989 kb on + strand, within SM_b20810at 596.989 kb on + strand, within SM_b20810at 596.990 kb on - strand, within SM_b20810at 596.991 kb on + strand, within SM_b20810at 596.992 kb on - strand, within SM_b20810at 596.992 kb on - strand, within SM_b20810at 597.144 kb on - strand, within SM_b20810at 597.151 kb on + strand, within SM_b20810at 597.152 kb on - strand, within SM_b20810at 597.155 kb on + strand, within SM_b20810at 597.155 kb on + strand, within SM_b20810at 597.155 kb on + strand, within SM_b20810at 597.155 kb on + strand, within SM_b20810at 597.155 kb on + strand, within SM_b20810at 597.155 kb on + strand, within SM_b20810at 597.155 kb on + strand, within SM_b20810at 597.156 kb on - strand, within SM_b20810at 597.156 kb on - strand, within SM_b20810at 597.156 kb on - strand, within SM_b20810at 597.187 kb on + strand, within SM_b20810at 597.188 kb on - strand, within SM_b20810at 597.210 kb on + strand, within SM_b20810at 597.233 kb on - strand, within SM_b20810at 597.233 kb on - strand, within SM_b20810at 597.273 kb on + strand, within SM_b20810at 597.273 kb on + strand, within SM_b20810at 597.274 kb on - strand, within SM_b20810at 597.305 kb on - strand, within SM_b20810at 597.326 kb on + strand, within SM_b20810at 597.326 kb on + strand, within SM_b20810at 597.327 kb on - strand, within SM_b20810at 597.381 kb on + strand, within SM_b20810at 597.381 kb on + strand, within SM_b20810at 597.382 kb on - strand, within SM_b20810at 597.382 kb on - strand, within SM_b20810at 597.382 kb on - strand, within SM_b20810at 597.399 kb on - strand, within SM_b20810at 597.514 kb on + strandat 597.514 kb on + strandat 597.514 kb on + strandat 597.514 kb on + strandat 597.515 kb on - strandat 597.515 kb on - strandat 597.515 kb on - strandat 597.536 kb on + strandat 597.536 kb on + strandat 597.537 kb on - strandat 597.537 kb on - strandat 597.609 kb on + strandat 597.610 kb on - strandat 597.610 kb on - strandat 597.610 kb on - strandat 597.610 kb on - strandat 597.706 kb on - strandat 597.736 kb on + strandat 597.775 kb on - strandat 597.922 kb on + strand, within SM_b20811at 597.941 kb on + strand, within SM_b20811at 597.941 kb on + strand, within SM_b20811at 598.078 kb on + strandat 598.107 kb on + strandat 598.176 kb on + strandat 598.177 kb on - strandat 598.178 kb on + strandat 598.179 kb on - strandat 598.195 kb on + strandat 598.257 kb on - strandat 598.332 kb on + strand, within SM_b20812at 598.333 kb on - strand, within SM_b20812at 598.390 kb on + strand, within SM_b20812at 598.414 kb on + strand, within SM_b20812at 598.524 kb on + strand, within SM_b20812at 598.524 kb on + strand, within SM_b20812at 598.524 kb on + strand, within SM_b20812at 598.525 kb on - strand, within SM_b20812at 598.552 kb on + strand, within SM_b20812

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI
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594,624 + SM_b20809 0.12 -2.3
594,751 + SM_b20809 0.25 -0.5
594,751 + SM_b20809 0.25 -1.6
594,816 + SM_b20809 0.31 -0.2
594,816 + SM_b20809 0.31 -1.1
594,817 - SM_b20809 0.31 -2.5
594,860 + SM_b20809 0.36 -0.2
594,861 - SM_b20809 0.36 -0.2
594,861 - SM_b20809 0.36 -1.6
594,868 + SM_b20809 0.36 -0.7
594,918 + SM_b20809 0.41 -0.1
594,989 + SM_b20809 0.49 +1.6
595,043 + SM_b20809 0.54 +0.2
595,044 - SM_b20809 0.54 -1.8
595,360 - SM_b20809 0.86 -3.2
595,562 + -0.3
595,563 - -2.3
595,574 - -2.5
595,630 - -1.9
595,835 + SM_b20810 0.11 -2.0
595,835 + SM_b20810 0.11 -3.2
595,836 - SM_b20810 0.11 -3.4
595,950 + -1.2
595,950 + SM_b20810 0.17 -3.2
595,950 + SM_b20810 0.17 -4.8
595,951 - SM_b20810 0.17 -2.8
595,951 - SM_b20810 0.17 -3.4
595,951 - SM_b20810 0.17 -3.9
595,951 - SM_b20810 0.17 -3.3
595,951 - SM_b20810 0.17 -3.1
596,041 + SM_b20810 0.21 -3.3
596,041 + SM_b20810 0.21 -2.8
596,042 - SM_b20810 0.21 -2.3
596,042 - SM_b20810 0.21 -1.9
596,119 + SM_b20810 0.25 -3.3
596,119 + SM_b20810 0.25 -2.3
596,119 + SM_b20810 0.25 -2.9
596,119 + SM_b20810 0.25 -1.6
596,120 - SM_b20810 0.25 -1.5
596,120 - SM_b20810 0.25 -3.0
596,210 + SM_b20810 0.29 -1.9
596,210 + SM_b20810 0.29 -2.9
596,210 + SM_b20810 0.29 -2.0
596,210 + SM_b20810 0.29 -2.8
596,211 - SM_b20810 0.30 -2.3
596,211 - SM_b20810 0.30 -3.9
596,211 - SM_b20810 0.30 -2.2
596,211 - SM_b20810 0.30 -2.5
596,211 - SM_b20810 0.30 -3.6
596,279 + SM_b20810 0.33 -3.3
596,280 - SM_b20810 0.33 -2.5
596,379 - SM_b20810 0.38 -2.1
596,452 - SM_b20810 0.41 -3.2
596,459 - SM_b20810 0.42 -2.1
596,492 + SM_b20810 0.43 -2.9
596,492 + SM_b20810 0.43 -3.3
596,501 + SM_b20810 0.44 -1.9
596,502 - SM_b20810 0.44 -1.9
596,502 - SM_b20810 0.44 -2.5
596,606 + SM_b20810 0.49 -3.7
596,606 + SM_b20810 0.49 -2.7
596,606 + SM_b20810 0.49 -2.9
596,607 - SM_b20810 0.49 -2.0
596,695 + SM_b20810 0.53 -2.8
596,696 - SM_b20810 0.53 -3.5
596,743 + SM_b20810 0.56 -1.9
596,743 + SM_b20810 0.56 -2.7
596,744 - SM_b20810 0.56 +1.0
596,792 + SM_b20810 0.58 -2.5
596,792 + SM_b20810 0.58 -2.3
596,792 + SM_b20810 0.58 -2.6
596,792 + SM_b20810 0.58 -2.3
596,792 + SM_b20810 0.58 -3.5
596,793 - SM_b20810 0.58 -2.8
596,793 - SM_b20810 0.58 -2.4
596,793 - SM_b20810 0.58 -0.3
596,793 - SM_b20810 0.58 -3.3
596,793 - SM_b20810 0.58 -2.8
596,793 - SM_b20810 0.58 -3.7
596,793 - SM_b20810 0.58 -3.6
596,793 - SM_b20810 0.58 -2.5
596,866 - SM_b20810 0.62 -2.4
596,962 + SM_b20810 0.66 -3.7
596,962 + SM_b20810 0.66 -2.3
596,962 + SM_b20810 0.66 -2.7
596,989 + SM_b20810 0.68 -2.3
596,989 + SM_b20810 0.68 -2.2
596,989 + SM_b20810 0.68 -0.3
596,990 - SM_b20810 0.68 -3.5
596,991 + SM_b20810 0.68 -1.6
596,992 - SM_b20810 0.68 -2.6
596,992 - SM_b20810 0.68 -2.5
597,144 - SM_b20810 0.75 -1.7
597,151 + SM_b20810 0.76 -2.1
597,152 - SM_b20810 0.76 -2.3
597,155 + SM_b20810 0.76 -3.2
597,155 + SM_b20810 0.76 -2.5
597,155 + SM_b20810 0.76 -2.6
597,155 + SM_b20810 0.76 -3.3
597,155 + SM_b20810 0.76 -2.5
597,155 + SM_b20810 0.76 -2.2
597,155 + SM_b20810 0.76 -3.4
597,156 - SM_b20810 0.76 -3.5
597,156 - SM_b20810 0.76 -2.7
597,156 - SM_b20810 0.76 -2.4
597,187 + SM_b20810 0.78 -3.0
597,188 - SM_b20810 0.78 -2.8
597,210 + SM_b20810 0.79 -2.9
597,233 - SM_b20810 0.80 -1.0
597,233 - SM_b20810 0.80 -1.6
597,273 + SM_b20810 0.82 -4.0
597,273 + SM_b20810 0.82 -0.8
597,274 - SM_b20810 0.82 -0.4
597,305 - SM_b20810 0.83 -1.5
597,326 + SM_b20810 0.84 -3.7
597,326 + SM_b20810 0.84 -2.1
597,327 - SM_b20810 0.84 -0.7
597,381 + SM_b20810 0.87 -2.2
597,381 + SM_b20810 0.87 -2.8
597,382 - SM_b20810 0.87 -2.7
597,382 - SM_b20810 0.87 -0.3
597,382 - SM_b20810 0.87 -1.2
597,399 - SM_b20810 0.88 -2.3
597,514 + -2.6
597,514 + -3.4
597,514 + -2.9
597,514 + -4.2
597,515 - -3.1
597,515 - -3.2
597,515 - -2.9
597,536 + -0.1
597,536 + -2.6
597,537 - +0.6
597,537 - -1.6
597,609 + -0.7
597,610 - -0.0
597,610 - -0.4
597,610 - +0.3
597,610 - -0.4
597,706 - -0.5
597,736 + -1.6
597,775 - -1.0
597,922 + SM_b20811 0.41 +0.1
597,941 + SM_b20811 0.47 -0.3
597,941 + SM_b20811 0.47 +1.2
598,078 + -0.4
598,107 + +0.2
598,176 + +0.1
598,177 - -0.7
598,178 + -0.3
598,179 - +0.0
598,195 + -0.4
598,257 - +0.2
598,332 + SM_b20812 0.15 +0.3
598,333 - SM_b20812 0.15 -0.2
598,390 + SM_b20812 0.21 +1.0
598,414 + SM_b20812 0.23 -0.1
598,524 + SM_b20812 0.33 -0.1
598,524 + SM_b20812 0.33 -0.1
598,524 + SM_b20812 0.33 -1.1
598,525 - SM_b20812 0.33 +0.9
598,552 + SM_b20812 0.36 -0.9

Or see this region's nucleotide sequence