Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20760

Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20758 and SM_b20759 are separated by 122 nucleotidesSM_b20759 and SM_b20760 overlap by 1 nucleotidesSM_b20760 and SM_b20761 are separated by 4 nucleotides SM_b20758: SM_b20758 - ArsR family transcriptional regulator, at 1,551,129 to 1,551,863 _b20758 SM_b20759: SM_b20759 - carbon-phosphorus lyase, at 1,551,986 to 1,552,456 _b20759 SM_b20760: SM_b20760 - carbon-phosphorus lyase, at 1,552,456 to 1,553,058 _b20760 SM_b20761: SM_b20761 - carbon-phosphorus lyase, at 1,553,063 to 1,554,169 _b20761 Position (kb) 1552 1553 1554Strain fitness (log2 ratio) -1 0 1at 1551.773 kb on - strand, within SM_b20758at 1551.823 kb on - strandat 1551.944 kb on - strandat 1552.478 kb on - strandat 1552.479 kb on + strandat 1552.661 kb on + strand, within SM_b20760at 1552.817 kb on - strand, within SM_b20760at 1553.056 kb on + strandat 1553.066 kb on + strandat 1553.066 kb on + strandat 1553.066 kb on + strandat 1553.066 kb on + strandat 1553.066 kb on + strandat 1553.066 kb on + strandat 1553.067 kb on - strandat 1553.067 kb on - strandat 1553.070 kb on + strandat 1553.163 kb on + strandat 1553.163 kb on + strandat 1553.164 kb on - strandat 1553.225 kb on + strand, within SM_b20761at 1553.225 kb on + strand, within SM_b20761at 1553.330 kb on + strand, within SM_b20761at 1553.387 kb on + strand, within SM_b20761at 1553.388 kb on - strand, within SM_b20761at 1553.432 kb on + strand, within SM_b20761at 1553.435 kb on - strand, within SM_b20761at 1553.435 kb on - strand, within SM_b20761at 1553.709 kb on - strand, within SM_b20761

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI
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1,551,773 - SM_b20758 0.88 -1.0
1,551,823 - +0.6
1,551,944 - -1.0
1,552,478 - +0.5
1,552,479 + -0.4
1,552,661 + SM_b20760 0.34 -0.7
1,552,817 - SM_b20760 0.60 -0.8
1,553,056 + +0.4
1,553,066 + +0.0
1,553,066 + -0.0
1,553,066 + -0.4
1,553,066 + -0.3
1,553,066 + +0.8
1,553,066 + -1.2
1,553,067 - -0.4
1,553,067 - +0.4
1,553,070 + -0.0
1,553,163 + -0.2
1,553,163 + -0.1
1,553,164 - +0.3
1,553,225 + SM_b20761 0.15 +0.4
1,553,225 + SM_b20761 0.15 +0.4
1,553,330 + SM_b20761 0.24 +0.2
1,553,387 + SM_b20761 0.29 -1.4
1,553,388 - SM_b20761 0.29 +1.3
1,553,432 + SM_b20761 0.33 -0.3
1,553,435 - SM_b20761 0.34 -0.1
1,553,435 - SM_b20761 0.34 +0.2
1,553,709 - SM_b20761 0.58 -0.0

Or see this region's nucleotide sequence