Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20213 and SM_b20214 are separated by 263 nucleotides SM_b20214 and SM_b20215 are separated by 62 nucleotides
SM_b20213: SM_b20213 - hypothetical protein, at 219,980 to 221,863
_b20213
SM_b20214: SM_b20214 - oxidoreductase, at 222,127 to 222,930
_b20214
SM_b20215: SM_b20215 - transcriptional regulator, at 222,993 to 223,973
_b20215
Position (kb) 222
223 Strain fitness (log2 ratio) -2
-1
0
1
2 at 221.225 kb on + strand, within SM_b20213 at 221.226 kb on - strand, within SM_b20213 at 221.226 kb on - strand, within SM_b20213 at 221.241 kb on - strand, within SM_b20213 at 221.316 kb on + strand, within SM_b20213 at 221.316 kb on + strand, within SM_b20213 at 221.435 kb on + strand, within SM_b20213 at 221.435 kb on + strand, within SM_b20213 at 221.435 kb on + strand, within SM_b20213 at 221.436 kb on - strand, within SM_b20213 at 221.445 kb on - strand, within SM_b20213 at 221.504 kb on + strand, within SM_b20213 at 221.504 kb on + strand, within SM_b20213 at 221.504 kb on + strand, within SM_b20213 at 221.766 kb on - strand at 221.776 kb on - strand at 221.902 kb on + strand at 222.034 kb on + strand at 222.091 kb on - strand at 222.191 kb on - strand at 222.276 kb on + strand, within SM_b20214 at 222.359 kb on + strand, within SM_b20214 at 222.360 kb on - strand, within SM_b20214 at 222.493 kb on + strand, within SM_b20214 at 222.494 kb on - strand, within SM_b20214 at 222.516 kb on - strand, within SM_b20214 at 222.544 kb on - strand, within SM_b20214 at 222.544 kb on - strand, within SM_b20214 at 222.544 kb on - strand, within SM_b20214 at 222.589 kb on + strand, within SM_b20214 at 222.666 kb on - strand, within SM_b20214 at 222.666 kb on - strand, within SM_b20214 at 222.850 kb on + strand at 222.850 kb on + strand at 222.850 kb on + strand at 222.850 kb on + strand at 222.850 kb on + strand at 222.851 kb on - strand at 222.928 kb on + strand at 222.928 kb on + strand at 222.941 kb on - strand at 223.032 kb on - strand at 223.032 kb on - strand at 223.084 kb on + strand at 223.129 kb on - strand, within SM_b20215 at 223.135 kb on + strand, within SM_b20215 at 223.136 kb on - strand, within SM_b20215 at 223.193 kb on + strand, within SM_b20215 at 223.194 kb on - strand, within SM_b20215 at 223.218 kb on + strand, within SM_b20215 at 223.430 kb on + strand, within SM_b20215 at 223.534 kb on - strand, within SM_b20215 at 223.666 kb on - strand, within SM_b20215
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 221,225 + SM_b20213 0.66 +0.3 221,226 - SM_b20213 0.66 +0.4 221,226 - SM_b20213 0.66 -1.0 221,241 - SM_b20213 0.67 -0.4 221,316 + SM_b20213 0.71 +0.0 221,316 + SM_b20213 0.71 +0.7 221,435 + SM_b20213 0.77 -0.6 221,435 + SM_b20213 0.77 -0.5 221,435 + SM_b20213 0.77 +0.9 221,436 - SM_b20213 0.77 -0.3 221,445 - SM_b20213 0.78 -0.1 221,504 + SM_b20213 0.81 +1.0 221,504 + SM_b20213 0.81 +0.3 221,504 + SM_b20213 0.81 +0.2 221,766 - -0.1 221,776 - +0.3 221,902 + -0.2 222,034 + +0.1 222,091 - +0.6 222,191 - -0.1 222,276 + SM_b20214 0.19 +0.6 222,359 + SM_b20214 0.29 +0.2 222,360 - SM_b20214 0.29 -0.1 222,493 + SM_b20214 0.46 -0.6 222,494 - SM_b20214 0.46 -1.2 222,516 - SM_b20214 0.48 -0.8 222,544 - SM_b20214 0.52 -0.9 222,544 - SM_b20214 0.52 -2.3 222,544 - SM_b20214 0.52 -0.6 222,589 + SM_b20214 0.57 -0.6 222,666 - SM_b20214 0.67 -0.9 222,666 - SM_b20214 0.67 -0.4 222,850 + -0.2 222,850 + +0.0 222,850 + -0.7 222,850 + +0.1 222,850 + -0.7 222,851 - +2.3 222,928 + +0.6 222,928 + +0.4 222,941 - -0.0 223,032 - +0.2 223,032 - +0.8 223,084 + +0.3 223,129 - SM_b20215 0.14 +0.1 223,135 + SM_b20215 0.14 +0.4 223,136 - SM_b20215 0.15 -0.3 223,193 + SM_b20215 0.20 +0.0 223,194 - SM_b20215 0.20 +0.0 223,218 + SM_b20215 0.23 -1.3 223,430 + SM_b20215 0.45 +1.1 223,534 - SM_b20215 0.55 -0.4 223,666 - SM_b20215 0.69 +0.2
Or see this region's nucleotide sequence