Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20077

Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20076 and SM_b20077 are separated by 99 nucleotidesSM_b20077 and SM_b20078 overlap by 1 nucleotides SM_b20076: SM_b20076 - short-chain dehydrogenase, at 83,965 to 84,981 _b20076 SM_b20077: SM_b20077 - sensor histidine kinase, at 85,081 to 86,745 _b20077 SM_b20078: SM_b20078 - response regulator, at 86,745 to 87,380 _b20078 Position (kb) 85 86 87Strain fitness (log2 ratio) -1 0 1at 84.215 kb on + strand, within SM_b20076at 84.517 kb on + strand, within SM_b20076at 84.562 kb on + strand, within SM_b20076at 84.563 kb on - strand, within SM_b20076at 84.598 kb on + strand, within SM_b20076at 84.598 kb on + strand, within SM_b20076at 84.599 kb on - strand, within SM_b20076at 85.032 kb on + strandat 85.033 kb on - strandat 85.033 kb on - strandat 85.035 kb on + strandat 85.035 kb on + strandat 85.035 kb on + strandat 85.036 kb on - strandat 85.036 kb on - strandat 85.036 kb on - strandat 85.384 kb on - strand, within SM_b20077at 85.384 kb on - strand, within SM_b20077at 85.606 kb on + strand, within SM_b20077at 85.606 kb on + strand, within SM_b20077at 85.607 kb on - strand, within SM_b20077at 85.607 kb on - strand, within SM_b20077at 85.607 kb on - strand, within SM_b20077at 85.826 kb on - strand, within SM_b20077at 86.136 kb on + strand, within SM_b20077at 86.445 kb on + strand, within SM_b20077at 86.445 kb on + strand, within SM_b20077at 86.446 kb on - strand, within SM_b20077at 86.446 kb on - strand, within SM_b20077at 86.446 kb on - strand, within SM_b20077at 86.446 kb on - strand, within SM_b20077at 86.446 kb on - strand, within SM_b20077at 86.477 kb on - strand, within SM_b20077at 86.484 kb on - strand, within SM_b20077at 86.540 kb on + strand, within SM_b20077at 86.872 kb on + strand, within SM_b20078at 86.872 kb on + strand, within SM_b20078at 87.060 kb on + strand, within SM_b20078at 87.060 kb on + strand, within SM_b20078at 87.060 kb on + strand, within SM_b20078at 87.061 kb on - strand, within SM_b20078at 87.188 kb on + strand, within SM_b20078at 87.275 kb on + strand, within SM_b20078at 87.276 kb on - strand, within SM_b20078at 87.357 kb on + strandat 87.437 kb on + strandat 87.542 kb on - strandat 87.542 kb on - strandat 87.553 kb on + strandat 87.612 kb on + strandat 87.618 kb on + strandat 87.618 kb on + strandat 87.618 kb on + strandat 87.619 kb on - strandat 87.619 kb on - strandat 87.625 kb on - strandat 87.625 kb on - strandat 87.625 kb on - strandat 87.642 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI
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84,215 + SM_b20076 0.25 -0.2
84,517 + SM_b20076 0.54 +0.2
84,562 + SM_b20076 0.59 +0.1
84,563 - SM_b20076 0.59 -0.0
84,598 + SM_b20076 0.62 -0.1
84,598 + SM_b20076 0.62 -0.1
84,599 - SM_b20076 0.62 +0.1
85,032 + -0.3
85,033 - -0.8
85,033 - +0.4
85,035 + +0.5
85,035 + -0.3
85,035 + +1.6
85,036 - +0.0
85,036 - -0.2
85,036 - -0.7
85,384 - SM_b20077 0.18 -0.6
85,384 - SM_b20077 0.18 -0.0
85,606 + SM_b20077 0.32 +0.4
85,606 + SM_b20077 0.32 -0.8
85,607 - SM_b20077 0.32 +0.3
85,607 - SM_b20077 0.32 -0.3
85,607 - SM_b20077 0.32 -0.3
85,826 - SM_b20077 0.45 -1.1
86,136 + SM_b20077 0.63 -0.8
86,445 + SM_b20077 0.82 +0.2
86,445 + SM_b20077 0.82 +0.4
86,446 - SM_b20077 0.82 +0.3
86,446 - SM_b20077 0.82 +0.0
86,446 - SM_b20077 0.82 -0.2
86,446 - SM_b20077 0.82 -0.6
86,446 - SM_b20077 0.82 -0.3
86,477 - SM_b20077 0.84 +0.0
86,484 - SM_b20077 0.84 +0.0
86,540 + SM_b20077 0.88 -0.4
86,872 + SM_b20078 0.20 +0.3
86,872 + SM_b20078 0.20 -0.1
87,060 + SM_b20078 0.50 -0.2
87,060 + SM_b20078 0.50 +0.6
87,060 + SM_b20078 0.50 -0.4
87,061 - SM_b20078 0.50 -1.0
87,188 + SM_b20078 0.70 +0.8
87,275 + SM_b20078 0.83 -0.1
87,276 - SM_b20078 0.83 +1.6
87,357 + -0.1
87,437 + -1.1
87,542 - -0.7
87,542 - +0.4
87,553 + -0.2
87,612 + +1.6
87,618 + +0.1
87,618 + -1.4
87,618 + +0.0
87,619 - -0.2
87,619 - +0.6
87,625 - -0.0
87,625 - +0.8
87,625 - -0.9
87,642 + +0.6

Or see this region's nucleotide sequence