Strain Fitness in Sinorhizobium meliloti 1021 around SMc02486

Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02487 and SMc02486 are separated by 36 nucleotidesSMc02486 and SMc02485 overlap by 4 nucleotidesSMc02485 and SMc02484 overlap by 1 nucleotides SMc02487: SMc02487 - dihydrolipoamide dehydrogenase, at 3,308,114 to 3,309,520 SMc02487 SMc02486: SMc02486 - oxidoreductase, at 3,309,557 to 3,310,309 SMc02486 SMc02485: SMc02485 - signal peptide protein, at 3,310,306 to 3,310,806 SMc02485 SMc02484: SMc02484 - amino acid efflux transmembrane protein, at 3,310,806 to 3,311,450 SMc02484 Position (kb) 3309 3310 3311Strain fitness (log2 ratio) -1 0 1at 3309.598 kb on - strandat 3309.598 kb on - strandat 3309.622 kb on - strandat 3309.765 kb on - strand, within SMc02486at 3309.765 kb on - strand, within SMc02486at 3309.835 kb on - strand, within SMc02486at 3309.844 kb on - strand, within SMc02486at 3309.844 kb on - strand, within SMc02486at 3310.207 kb on - strand, within SMc02486at 3310.207 kb on - strand, within SMc02486at 3310.207 kb on - strand, within SMc02486at 3310.354 kb on - strandat 3310.354 kb on - strandat 3310.354 kb on - strandat 3310.482 kb on - strand, within SMc02485at 3310.695 kb on - strand, within SMc02485at 3311.237 kb on - strand, within SMc02484at 3311.279 kb on - strand, within SMc02484at 3311.279 kb on - strand, within SMc02484at 3311.279 kb on - strand, within SMc02484at 3311.279 kb on - strand, within SMc02484

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI
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3,309,598 - +0.2
3,309,598 - +0.1
3,309,622 - +0.1
3,309,765 - SMc02486 0.28 +0.3
3,309,765 - SMc02486 0.28 +0.8
3,309,835 - SMc02486 0.37 -0.0
3,309,844 - SMc02486 0.38 +0.5
3,309,844 - SMc02486 0.38 +1.0
3,310,207 - SMc02486 0.86 +0.2
3,310,207 - SMc02486 0.86 -0.4
3,310,207 - SMc02486 0.86 +1.2
3,310,354 - -0.1
3,310,354 - -0.4
3,310,354 - +1.3
3,310,482 - SMc02485 0.35 +0.2
3,310,695 - SMc02485 0.78 +0.5
3,311,237 - SMc02484 0.67 +0.7
3,311,279 - SMc02484 0.73 -0.3
3,311,279 - SMc02484 0.73 -0.8
3,311,279 - SMc02484 0.73 +0.3
3,311,279 - SMc02484 0.73 -0.7

Or see this region's nucleotide sequence