Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0601 and SMa0604 are separated by 621 nucleotides SMa0604 and SMa0606 overlap by 4 nucleotides SMa0606 and SMa0607 are separated by 52 nucleotides
SMa0601: SMa0601 - hypothetical protein, at 319,553 to 321,799
SMa0601
SMa0604: SMa0604 - hypothetical protein, at 322,421 to 323,233
SMa0604
SMa0606: SMa0606 - hypothetical protein, at 323,230 to 323,565
SMa0606
SMa0607: SMa0607 - hypothetical protein, at 323,618 to 325,168
SMa0607
Position (kb) 322
323
324 Strain fitness (log2 ratio) -1
0
1
2 at 321.487 kb on + strand, within SMa0601 at 321.487 kb on + strand, within SMa0601 at 321.488 kb on - strand, within SMa0601 at 321.488 kb on - strand, within SMa0601 at 321.488 kb on - strand, within SMa0601 at 321.513 kb on + strand, within SMa0601 at 321.514 kb on - strand, within SMa0601 at 321.514 kb on - strand, within SMa0601 at 321.517 kb on - strand, within SMa0601 at 321.517 kb on - strand, within SMa0601 at 321.619 kb on + strand at 321.620 kb on - strand at 321.621 kb on + strand at 321.621 kb on + strand at 321.621 kb on + strand at 321.622 kb on - strand at 321.622 kb on - strand at 321.669 kb on + strand at 321.669 kb on + strand at 321.670 kb on - strand at 321.670 kb on - strand at 321.670 kb on - strand at 321.811 kb on - strand at 321.922 kb on + strand at 321.922 kb on + strand at 321.995 kb on + strand at 321.996 kb on - strand at 322.002 kb on + strand at 322.002 kb on + strand at 322.002 kb on + strand at 322.008 kb on - strand at 322.030 kb on - strand at 322.044 kb on + strand at 322.045 kb on - strand at 322.373 kb on - strand at 322.400 kb on + strand at 322.400 kb on + strand at 322.401 kb on - strand at 322.401 kb on - strand at 322.401 kb on - strand at 322.403 kb on + strand at 322.403 kb on + strand at 322.403 kb on + strand at 322.404 kb on - strand at 322.404 kb on - strand at 322.617 kb on - strand, within SMa0604 at 322.621 kb on + strand, within SMa0604 at 322.622 kb on - strand, within SMa0604 at 322.664 kb on + strand, within SMa0604 at 322.732 kb on + strand, within SMa0604 at 322.733 kb on - strand, within SMa0604 at 322.733 kb on - strand, within SMa0604 at 322.776 kb on - strand, within SMa0604 at 322.789 kb on + strand, within SMa0604 at 322.789 kb on + strand, within SMa0604 at 322.789 kb on + strand, within SMa0604 at 322.790 kb on - strand, within SMa0604 at 322.904 kb on + strand, within SMa0604 at 322.905 kb on - strand, within SMa0604 at 323.094 kb on - strand, within SMa0604 at 323.131 kb on + strand, within SMa0604 at 323.153 kb on - strand at 323.258 kb on - strand at 323.444 kb on - strand, within SMa0606 at 323.498 kb on + strand, within SMa0606 at 323.518 kb on + strand, within SMa0606 at 323.519 kb on - strand, within SMa0606 at 323.519 kb on - strand, within SMa0606 at 323.519 kb on - strand, within SMa0606 at 323.519 kb on - strand, within SMa0606 at 323.519 kb on - strand, within SMa0606 at 323.543 kb on - strand at 323.554 kb on + strand at 323.554 kb on + strand at 323.602 kb on - strand at 323.636 kb on + strand at 323.636 kb on + strand at 323.636 kb on + strand at 323.688 kb on - strand at 323.711 kb on + strand at 324.005 kb on + strand, within SMa0607 at 324.006 kb on - strand, within SMa0607 at 324.155 kb on + strand, within SMa0607 at 324.156 kb on - strand, within SMa0607 at 324.200 kb on - strand, within SMa0607 at 324.219 kb on - strand, within SMa0607 at 324.219 kb on - strand, within SMa0607 at 324.221 kb on + strand, within SMa0607 at 324.221 kb on + strand, within SMa0607 at 324.222 kb on - strand, within SMa0607 at 324.222 kb on - strand, within SMa0607
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 321,487 + SMa0601 0.86 -0.2 321,487 + SMa0601 0.86 +0.2 321,488 - SMa0601 0.86 +1.0 321,488 - SMa0601 0.86 -0.3 321,488 - SMa0601 0.86 +0.1 321,513 + SMa0601 0.87 -0.3 321,514 - SMa0601 0.87 -0.3 321,514 - SMa0601 0.87 +0.7 321,517 - SMa0601 0.87 +0.7 321,517 - SMa0601 0.87 +1.2 321,619 + -0.1 321,620 - -0.0 321,621 + -0.1 321,621 + -1.6 321,621 + -0.0 321,622 - +0.1 321,622 - +0.5 321,669 + -0.4 321,669 + -0.1 321,670 - -0.0 321,670 - -0.2 321,670 - -0.1 321,811 - +0.2 321,922 + -0.3 321,922 + -0.4 321,995 + +0.3 321,996 - +1.7 322,002 + +0.3 322,002 + -0.1 322,002 + +0.5 322,008 - -0.5 322,030 - +0.9 322,044 + +0.1 322,045 - +0.8 322,373 - +0.6 322,400 + +0.9 322,400 + -0.8 322,401 - -1.1 322,401 - +0.0 322,401 - -0.8 322,403 + -0.0 322,403 + -0.2 322,403 + -1.0 322,404 - +0.0 322,404 - -0.6 322,617 - SMa0604 0.24 +0.3 322,621 + SMa0604 0.25 +0.5 322,622 - SMa0604 0.25 -0.4 322,664 + SMa0604 0.30 +0.3 322,732 + SMa0604 0.38 +2.1 322,733 - SMa0604 0.38 -1.2 322,733 - SMa0604 0.38 +0.3 322,776 - SMa0604 0.44 +0.9 322,789 + SMa0604 0.45 +0.3 322,789 + SMa0604 0.45 +0.5 322,789 + SMa0604 0.45 +0.1 322,790 - SMa0604 0.45 +0.2 322,904 + SMa0604 0.59 +0.2 322,905 - SMa0604 0.60 +0.9 323,094 - SMa0604 0.83 +0.7 323,131 + SMa0604 0.87 +0.9 323,153 - -0.8 323,258 - -0.4 323,444 - SMa0606 0.64 +0.5 323,498 + SMa0606 0.80 -0.1 323,518 + SMa0606 0.86 +1.2 323,519 - SMa0606 0.86 +0.0 323,519 - SMa0606 0.86 +0.2 323,519 - SMa0606 0.86 +1.3 323,519 - SMa0606 0.86 +0.7 323,519 - SMa0606 0.86 -0.8 323,543 - -0.2 323,554 + -0.4 323,554 + +0.0 323,602 - +0.1 323,636 + +0.1 323,636 + -0.2 323,636 + +0.8 323,688 - +0.1 323,711 + +0.3 324,005 + SMa0607 0.25 -0.3 324,006 - SMa0607 0.25 -0.1 324,155 + SMa0607 0.35 -0.0 324,156 - SMa0607 0.35 +0.2 324,200 - SMa0607 0.38 +0.7 324,219 - SMa0607 0.39 +0.1 324,219 - SMa0607 0.39 -0.1 324,221 + SMa0607 0.39 +1.1 324,221 + SMa0607 0.39 +0.9 324,222 - SMa0607 0.39 +0.2 324,222 - SMa0607 0.39 +0.1
Or see this region's nucleotide sequence