Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0404 and SMa0405 are separated by 352 nucleotides SMa0405 and SMa0407 are separated by 352 nucleotides
SMa0404: SMa0404 - FMN-dependent dehydrogenase, at 219,940 to 221,085
SMa0404
SMa0405: SMa0405 - transposase, fragment, at 221,438 to 221,725
SMa0405
SMa0407: SMa0407 - hypothetical protein, at 222,078 to 222,866
SMa0407
Position (kb) 221
222 Strain fitness (log2 ratio) -1
0
1
2 at 220.848 kb on + strand, within SMa0404 at 220.849 kb on - strand, within SMa0404 at 220.849 kb on - strand, within SMa0404 at 220.933 kb on + strand, within SMa0404 at 220.939 kb on + strand, within SMa0404 at 221.006 kb on - strand at 221.160 kb on + strand at 221.160 kb on + strand at 221.160 kb on + strand at 221.161 kb on - strand at 221.161 kb on - strand at 221.161 kb on - strand at 221.209 kb on + strand at 221.209 kb on + strand at 221.297 kb on + strand at 221.297 kb on + strand at 221.526 kb on - strand, within SMa0405 at 221.526 kb on - strand, within SMa0405 at 221.698 kb on + strand at 221.699 kb on - strand at 221.813 kb on + strand at 221.822 kb on - strand at 221.854 kb on + strand at 221.888 kb on - strand at 221.941 kb on + strand at 221.942 kb on - strand at 222.055 kb on + strand at 222.055 kb on + strand at 222.056 kb on - strand at 222.062 kb on + strand at 222.063 kb on - strand at 222.063 kb on - strand at 222.063 kb on - strand at 222.069 kb on + strand at 222.070 kb on - strand at 222.187 kb on - strand, within SMa0407 at 222.237 kb on + strand, within SMa0407 at 222.356 kb on + strand, within SMa0407 at 222.415 kb on - strand, within SMa0407 at 222.512 kb on - strand, within SMa0407 at 222.551 kb on + strand, within SMa0407 at 222.555 kb on + strand, within SMa0407 at 222.556 kb on - strand, within SMa0407 at 222.619 kb on + strand, within SMa0407 at 222.619 kb on + strand, within SMa0407 at 222.620 kb on - strand, within SMa0407 at 222.646 kb on + strand, within SMa0407 at 222.646 kb on + strand, within SMa0407 at 222.647 kb on - strand, within SMa0407 at 222.647 kb on - strand, within SMa0407
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 220,848 + SMa0404 0.79 +1.3 220,849 - SMa0404 0.79 -0.1 220,849 - SMa0404 0.79 -0.2 220,933 + SMa0404 0.87 +0.4 220,939 + SMa0404 0.87 -1.3 221,006 - +0.1 221,160 + -0.2 221,160 + +0.7 221,160 + +1.7 221,161 - +0.3 221,161 - +0.1 221,161 - -0.2 221,209 + -0.3 221,209 + -0.2 221,297 + +0.5 221,297 + +0.2 221,526 - SMa0405 0.31 -0.1 221,526 - SMa0405 0.31 -0.2 221,698 + +1.7 221,699 - +0.1 221,813 + -0.4 221,822 - -0.1 221,854 + -0.1 221,888 - -0.8 221,941 + -0.8 221,942 - -0.2 222,055 + -1.4 222,055 + +0.1 222,056 - -0.3 222,062 + -0.5 222,063 - -0.3 222,063 - +0.2 222,063 - -0.8 222,069 + +1.9 222,070 - -0.1 222,187 - SMa0407 0.14 +0.4 222,237 + SMa0407 0.20 +0.4 222,356 + SMa0407 0.35 +0.6 222,415 - SMa0407 0.43 -0.4 222,512 - SMa0407 0.55 -0.4 222,551 + SMa0407 0.60 -0.0 222,555 + SMa0407 0.60 -0.8 222,556 - SMa0407 0.61 +0.2 222,619 + SMa0407 0.69 -0.3 222,619 + SMa0407 0.69 -0.3 222,620 - SMa0407 0.69 -1.2 222,646 + SMa0407 0.72 +0.0 222,646 + SMa0407 0.72 -0.4 222,647 - SMa0407 0.72 -0.2 222,647 - SMa0407 0.72 -0.6
Or see this region's nucleotide sequence