Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3049

Experiment: PEG (Day 3) - Cage2;Mouse1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PEG (Day 3) - Cage2;Mouse1
3,863,503	+		BT3048	0.71	-0.9
3,863,504	-		BT3048	0.71	+0.0
3,863,676	+		BT3048	0.77	-0.2
3,863,677	-		BT3048	0.77	-1.4
3,863,677	-		BT3048	0.77	+1.1
3,863,684	+		BT3048	0.77	-2.9
3,863,685	-		BT3048	0.77	-2.2
3,863,720	+		BT3048	0.79	+0.2
3,863,769	-		BT3048	0.81	-1.0
3,863,774	-		BT3048	0.81	-0.7
3,863,774	-		BT3048	0.81	-1.9
3,863,777	+		BT3048	0.81	-1.2
3,863,777	+		BT3048	0.81	-1.9
3,863,777	+		BT3048	0.81	-0.9
3,863,778	-		BT3048	0.81	-1.0
3,863,778	-		BT3048	0.81	+0.0
3,863,783	+		BT3048	0.81	-0.7
3,863,882	-		BT3048	0.85	-1.8
3,863,896	+		BT3048	0.85	-1.2
3,863,899	+		BT3048	0.85	+1.2
3,863,900	-		BT3048	0.85	+1.6
3,863,915	+		BT3048	0.86	+0.0
3,863,955	-		BT3048	0.88	-1.4
3,863,955	-		BT3048	0.88	-0.8
3,864,010	+		BT3048	0.90	-1.2
3,864,036	+				-1.2
3,864,057	+				-0.5
3,864,061	+				-2.1
3,864,091	+				+0.0
3,864,092	-				-1.4
3,864,095	-				-2.0
3,864,095	-				-1.0
3,864,095	-				-1.0
3,864,095	-				-1.9
3,864,185	+				-0.7
3,864,237	-				-1.0
3,864,260	+				-0.4
3,864,260	+				-2.6
3,864,261	-				-1.1
3,864,261	-				-1.0
3,864,273	+				-1.4
3,864,304	+				-1.6
3,864,305	-				-2.8
3,864,335	-				+0.0
3,864,412	+				-0.4
3,864,425	+				-0.0
3,864,461	+				-0.1
3,864,462	-				-2.4
3,864,484	+				-2.8
3,864,588	-				-1.1
3,864,669	+				+3.9
3,864,677	-				-0.7
3,864,679	+				-1.4
3,864,681	+				+2.6
3,864,740	-				-0.9
3,864,740	-				-0.6
3,864,835	+				-2.0
3,864,837	+				-0.4
3,864,885	+				-0.7
3,864,920	+		BT3049	0.11	-2.2
3,864,920	+		BT3049	0.11	-2.4
3,864,920	+		BT3049	0.11	+2.0
3,864,920	+		BT3049	0.11	-0.7
3,864,921	-		BT3049	0.11	-1.4
3,864,921	-		BT3049	0.11	+1.6
3,864,925	-		BT3049	0.11	+0.0
3,864,928	+		BT3049	0.11	+2.6
3,864,928	+		BT3049	0.11	-1.2
3,864,928	+		BT3049	0.11	-1.0
3,864,929	-		BT3049	0.11	+4.2
3,864,939	+		BT3049	0.11	-1.8
3,864,941	+		BT3049	0.11	-1.5
3,864,946	+		BT3049	0.11	-1.2
3,864,979	+		BT3049	0.12	+1.3
3,865,054	+		BT3049	0.14	-2.7
3,865,067	+		BT3049	0.14	-1.0
3,865,170	+		BT3049	0.17	-1.6
3,865,170	+		BT3049	0.17	+0.3
3,865,183	-		BT3049	0.17	+1.1
3,865,195	-		BT3049	0.17	-2.7
3,865,197	-		BT3049	0.17	-0.6
3,865,220	-		BT3049	0.18	-0.6
3,865,251	+		BT3049	0.19	-3.4
3,865,300	+		BT3049	0.20	-1.6
3,865,301	-		BT3049	0.20	-0.9
3,865,443	+		BT3049	0.23	-1.8
3,865,444	-		BT3049	0.23	-1.0
3,865,447	+		BT3049	0.24	-0.4
3,865,447	+		BT3049	0.24	-0.7
3,865,473	+		BT3049	0.24	-1.7
3,865,477	-		BT3049	0.24	-0.9
3,865,497	+		BT3049	0.25	+0.3
3,865,500	+		BT3049	0.25	+0.9
3,865,564	-		BT3049	0.26	-3.3
3,865,574	-		BT3049	0.27	-0.1
3,865,678	-		BT3049	0.29	-0.7
3,865,681	-		BT3049	0.29	-1.2
3,865,686	-		BT3049	0.29	+0.9
3,865,784	+		BT3049	0.32	-2.8
3,865,784	+		BT3049	0.32	+0.0
3,865,819	+		BT3049	0.33	-0.7
3,865,820	-		BT3049	0.33	-3.9
3,865,881	-		BT3049	0.34	+1.6
3,865,891	+				+1.0
3,865,946	+		BT3049	0.36	-0.5
3,865,946	+		BT3049	0.36	-0.4
3,865,978	+				-0.4
3,865,979	-		BT3049	0.36	-0.2
3,865,979	-		BT3049	0.36	-1.1
3,866,055	-		BT3049	0.38	-0.9
3,866,081	+		BT3049	0.39	-1.9
3,866,083	+		BT3049	0.39	-1.4
3,866,083	+		BT3049	0.39	-2.1
3,866,084	-		BT3049	0.39	-1.4
3,866,086	-		BT3049	0.39	-1.2
3,866,122	+		BT3049	0.40	-3.8
3,866,158	+		BT3049	0.41	-1.8
3,866,158	+		BT3049	0.41	-1.6
3,866,159	-		BT3049	0.41	+0.3
3,866,280	-		BT3049	0.44	-2.2
3,866,299	-		BT3049	0.44	-2.1
3,866,322	+		BT3049	0.45	+0.4
3,866,323	-		BT3049	0.45	-1.2
3,866,344	+		BT3049	0.45	+1.4
3,866,344	+		BT3049	0.45	-1.4
3,866,345	-		BT3049	0.45	-0.9
3,866,345	-		BT3049	0.45	-2.0
3,866,346	+		BT3049	0.45	-2.6
3,866,369	-		BT3049	0.46	+0.2
3,866,370	+		BT3049	0.46	-1.3
3,866,375	-		BT3049	0.46	-0.4
3,866,437	-		BT3049	0.47	-0.1
3,866,449	+		BT3049	0.48	+1.6
3,866,449	+		BT3049	0.48	+1.6
3,866,532	+		BT3049	0.50	-2.7
3,866,651	+		BT3049	0.53	+0.0
3,866,660	-		BT3049	0.53	-0.3
3,866,684	-		BT3049	0.53	-1.4
3,866,689	+		BT3049	0.54	+2.8
3,866,689	+		BT3049	0.54	-0.2
3,866,690	-		BT3049	0.54	-1.1
3,866,691	+		BT3049	0.54	-1.3
3,866,691	+		BT3049	0.54	+1.6
3,866,692	-		BT3049	0.54	+0.6
3,866,692	-		BT3049	0.54	-2.9
3,866,719	+		BT3049	0.54	+0.0
3,866,720	-		BT3049	0.54	+3.0
3,866,755	-		BT3049	0.55	-3.8
3,866,841	-		BT3049	0.57	+1.2
3,866,841	-		BT3049	0.57	-0.9
3,866,844	+		BT3049	0.57	-0.7
3,866,844	+		BT3049	0.57	-1.6
3,866,845	-		BT3049	0.57	-0.3
3,866,884	-		BT3049	0.58	-0.6
3,866,890	-		BT3049	0.58	-0.8
3,866,901	+		BT3049	0.59	-1.2
3,866,910	+		BT3049	0.59	+0.0
3,866,919	+		BT3049	0.59	-1.1
3,866,919	+		BT3049	0.59	+1.6
3,866,920	-		BT3049	0.59	+1.2
3,866,922	+		BT3049	0.59	-0.5
3,866,945	+		BT3049	0.60	-2.1
3,867,026	-		BT3049	0.62	+0.3
3,867,030	+		BT3049	0.62	+0.5
3,867,031	-		BT3049	0.62	+1.9
3,867,274	+		BT3049	0.68	-2.2
3,867,408	-		BT3049	0.71	-0.5
3,867,465	+		BT3049	0.72	-0.9
3,867,535	+		BT3049	0.74	-0.2
3,867,535	+		BT3049	0.74	-1.0
3,867,538	+		BT3049	0.74	-0.5
3,867,642	-		BT3049	0.77	-0.1
3,867,666	+		BT3049	0.77	+1.8
3,867,666	+		BT3049	0.77	-0.4
3,867,674	+		BT3049	0.77	-0.6
3,867,687	+		BT3049	0.78	+0.3
3,867,798	+		BT3049	0.80	-2.9
3,867,828	+		BT3049	0.81	-0.4
3,867,829	-		BT3049	0.81	-0.7
3,867,830	+		BT3049	0.81	-0.5
3,867,831	-		BT3049	0.81	-0.4
3,867,839	-		BT3049	0.81	-0.4
3,867,839	-		BT3049	0.81	+1.2
3,867,930	+		BT3049	0.84	-0.4
3,867,933	+		BT3049	0.84	+1.0
3,867,933	+		BT3049	0.84	+0.2
3,867,934	-		BT3049	0.84	-0.6
3,867,935	+		BT3049	0.84	+0.6
3,867,935	+		BT3049	0.84	-0.7
3,867,938	+		BT3049	0.84	+2.2
3,867,977	+		BT3049	0.85	-0.7
3,868,197	+				+0.8
3,868,198	-				-0.3
3,868,198	-				-1.2
3,868,330	+				-0.8
3,868,330	+				-2.3
3,868,331	-				-0.2
3,868,331	-				+2.2
3,868,350	+				-1.0
3,868,350	+				-2.4
3,868,350	+				-1.5
3,868,350	+				-0.6
3,868,363	-				+2.6
3,868,424	+				-2.2
3,868,448	+				+1.6
3,868,466	-				-1.4
3,868,470	+				-0.7
3,868,471	-				-1.2
3,868,486	+				-2.7
3,868,507	-				-2.6
3,868,514	-				-0.3
3,868,514	-				+0.0
3,868,531	-				+0.9
3,868,633	-				+0.6
3,868,686	+		BT3050	0.12	+0.3
3,868,728	+		BT3050	0.16	-0.4
3,868,728	+		BT3050	0.16	-1.0
3,868,728	+		BT3050	0.16	-1.5
3,868,728	+		BT3050	0.16	-0.7
3,868,728	+		BT3050	0.16	-2.0
3,868,728	+		BT3050	0.16	-0.6
3,868,728	+		BT3050	0.16	-2.0
3,868,729	-		BT3050	0.16	-0.6
3,868,729	-		BT3050	0.16	-1.4
3,868,742	-		BT3050	0.17	-2.0
3,868,742	-		BT3050	0.17	-1.1
3,868,801	-		BT3050	0.23	-2.9
3,868,801	-		BT3050	0.23	-0.2
3,868,801	-		BT3050	0.23	-0.6
3,868,839	+		BT3050	0.27	-1.1
3,868,840	-		BT3050	0.28	-1.2
3,868,898	+		BT3050	0.34	+1.7
3,868,899	-		BT3050	0.34	-1.6
3,868,901	-		BT3050	0.34	-1.4
3,868,990	+		BT3050	0.43	+0.8
3,869,000	-		BT3050	0.44	-1.0
3,869,034	+		BT3050	0.48	+0.2
3,869,035	-		BT3050	0.48	-0.2
3,869,035	-		BT3050	0.48	-1.2
3,869,039	-		BT3050	0.48	-1.3
3,869,049	-		BT3050	0.49	-2.0
3,869,080	-		BT3050	0.52	-1.9
3,869,140	+		BT3050	0.59	-0.7
3,869,158	+		BT3050	0.60	+1.6
3,869,162	+		BT3050	0.61	+1.0
3,869,402	+		BT3050	0.86	+0.0
3,869,434	-		BT3050	0.89	+1.6
3,869,447	+				-2.6
3,869,447	+				-0.8
3,869,452	-				-0.6
3,869,452	-				-0.6
3,869,459	-				-1.2
3,869,482	-				+0.2
3,869,517	-				-2.1
3,869,535	-				-1.9
3,869,539	+				-0.4