Experiment: PEG (Day 3) - Cage2;Mouse1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0424 and BT0425 are separated by 99 nucleotides BT0425 and BT0426 are separated by 358 nucleotides BT0426 and BT0427 overlap by 7 nucleotides BT0427 and BT0428 are separated by 96 nucleotides
BT0424: BT0424 - 50S ribosomal protein L35 (NCBI ptt file), at 512,111 to 512,308
BT0424
BT0425: BT0425 - 50S ribosomal protein L20 (NCBI ptt file), at 512,408 to 512,758
BT0425
BT0426: BT0426 - conserved hypothetical protein (NCBI ptt file), at 513,117 to 513,887
BT0426
BT0427: BT0427 - xanthine phosphoribosyltransferase (NCBI ptt file), at 513,881 to 514,453
BT0427
BT0428: BT0428 - phenylacetate-coenzyme A ligase (NCBI ptt file), at 514,550 to 515,857
BT0428
Position (kb) 513
514 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 512.824 kb on + strand at 512.824 kb on + strand at 513.069 kb on - strand at 513.104 kb on + strand at 513.109 kb on - strand at 513.109 kb on - strand at 513.116 kb on + strand at 513.116 kb on + strand at 513.117 kb on - strand at 513.121 kb on + strand at 513.161 kb on + strand at 513.174 kb on - strand at 513.280 kb on - strand, within BT0426 at 513.315 kb on - strand, within BT0426 at 513.351 kb on + strand, within BT0426 at 513.352 kb on - strand, within BT0426 at 513.440 kb on + strand, within BT0426 at 513.440 kb on + strand, within BT0426 at 513.441 kb on - strand, within BT0426 at 513.441 kb on - strand, within BT0426 at 513.474 kb on + strand, within BT0426 at 513.564 kb on - strand, within BT0426 at 513.801 kb on + strand, within BT0426 at 513.802 kb on - strand, within BT0426 at 513.832 kb on - strand at 513.836 kb on + strand at 513.837 kb on - strand at 513.901 kb on + strand at 514.144 kb on - strand, within BT0427 at 514.245 kb on + strand, within BT0427 at 514.246 kb on - strand, within BT0427 at 514.283 kb on + strand, within BT0427 at 514.284 kb on - strand, within BT0427 at 514.457 kb on - strand at 514.480 kb on + strand at 514.481 kb on - strand at 514.507 kb on - strand at 514.528 kb on - strand at 514.672 kb on + strand at 514.673 kb on - strand at 514.702 kb on - strand, within BT0428 at 514.775 kb on - strand, within BT0428 at 514.783 kb on - strand, within BT0428 at 514.783 kb on - strand, within BT0428 at 514.859 kb on - strand, within BT0428
Per-strain Table
Position Strand Gene LocusTag Fraction PEG (Day 3) - Cage2;Mouse1 remove 512,824 + -1.1 512,824 + -0.8 513,069 - -0.8 513,104 + -1.3 513,109 - -0.8 513,109 - -1.3 513,116 + -0.5 513,116 + -3.8 513,117 - -0.8 513,121 + -0.1 513,161 + +2.5 513,174 - -0.5 513,280 - BT0426 0.21 -2.4 513,315 - BT0426 0.26 -1.4 513,351 + BT0426 0.30 -0.1 513,352 - BT0426 0.30 -2.8 513,440 + BT0426 0.42 +0.2 513,440 + BT0426 0.42 -0.8 513,441 - BT0426 0.42 +1.1 513,441 - BT0426 0.42 -2.2 513,474 + BT0426 0.46 -0.2 513,564 - BT0426 0.58 +2.5 513,801 + BT0426 0.89 -0.5 513,802 - BT0426 0.89 -1.8 513,832 - -2.1 513,836 + -2.1 513,837 - -1.8 513,901 + -2.3 514,144 - BT0427 0.46 -0.8 514,245 + BT0427 0.64 -1.1 514,246 - BT0427 0.64 -1.8 514,283 + BT0427 0.70 -1.5 514,284 - BT0427 0.70 -0.5 514,457 - -0.5 514,480 + -2.1 514,481 - +0.7 514,507 - -1.1 514,528 - -2.9 514,672 + -0.1 514,673 - -3.6 514,702 - BT0428 0.12 -2.3 514,775 - BT0428 0.17 -1.5 514,783 - BT0428 0.18 -0.2 514,783 - BT0428 0.18 +1.8 514,859 - BT0428 0.24 -0.8
Or see this region's nucleotide sequence