Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0366

Experiment: PEG (Day 3) - Cage2;Mouse1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0365 and BT0366 are separated by 259 nucleotidesBT0366 and BT0367 are separated by 155 nucleotides BT0365: BT0365 - hypothetical protein (NCBI ptt file), at 443,848 to 446,127 BT0365 BT0366: BT0366 - two-component system sensor histidine kinase/response regulator, hybrid ('one component system') (NCBI ptt file), at 446,387 to 450,649 BT0366 BT0367: BT0367 - putative endo-arabinase (NCBI ptt file), at 450,805 to 452,346 BT0367 Position (kb) 446 447 448 449 450 451Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 445.447 kb on + strand, within BT0365at 445.501 kb on + strand, within BT0365at 445.578 kb on - strand, within BT0365at 445.680 kb on - strand, within BT0365at 445.697 kb on + strand, within BT0365at 445.790 kb on - strand, within BT0365at 445.956 kb on + strandat 445.956 kb on + strandat 445.957 kb on - strandat 446.131 kb on + strandat 446.131 kb on + strandat 446.131 kb on + strandat 446.157 kb on + strandat 446.158 kb on - strandat 446.167 kb on + strandat 446.184 kb on + strandat 446.228 kb on + strandat 446.229 kb on - strandat 446.231 kb on + strandat 446.321 kb on + strandat 446.321 kb on + strandat 446.379 kb on + strandat 446.380 kb on - strandat 446.676 kb on + strandat 446.677 kb on - strandat 446.747 kb on + strandat 446.829 kb on - strand, within BT0366at 447.013 kb on + strand, within BT0366at 447.040 kb on + strand, within BT0366at 447.075 kb on - strand, within BT0366at 447.106 kb on + strand, within BT0366at 447.107 kb on - strand, within BT0366at 447.348 kb on + strand, within BT0366at 447.481 kb on - strand, within BT0366at 447.525 kb on + strand, within BT0366at 447.569 kb on - strand, within BT0366at 447.678 kb on - strand, within BT0366at 447.802 kb on - strand, within BT0366at 447.858 kb on - strand, within BT0366at 447.923 kb on - strand, within BT0366at 447.929 kb on - strand, within BT0366at 447.977 kb on - strand, within BT0366at 448.164 kb on + strand, within BT0366at 448.193 kb on + strand, within BT0366at 448.206 kb on - strand, within BT0366at 448.234 kb on - strand, within BT0366at 448.239 kb on - strand, within BT0366at 448.307 kb on + strand, within BT0366at 448.312 kb on + strand, within BT0366at 448.312 kb on + strand, within BT0366at 448.313 kb on - strand, within BT0366at 448.337 kb on - strandat 448.408 kb on - strand, within BT0366at 448.408 kb on - strand, within BT0366at 448.410 kb on - strand, within BT0366at 448.410 kb on - strand, within BT0366at 448.418 kb on - strand, within BT0366at 448.518 kb on + strand, within BT0366at 448.650 kb on - strand, within BT0366at 448.712 kb on + strand, within BT0366at 448.713 kb on - strand, within BT0366at 448.717 kb on + strand, within BT0366at 448.720 kb on - strand, within BT0366at 448.766 kb on - strand, within BT0366at 448.848 kb on + strand, within BT0366at 448.893 kb on + strand, within BT0366at 448.894 kb on - strand, within BT0366at 448.927 kb on + strand, within BT0366at 448.936 kb on + strand, within BT0366at 448.945 kb on - strand, within BT0366at 449.055 kb on + strand, within BT0366at 449.096 kb on - strand, within BT0366at 449.213 kb on + strand, within BT0366at 449.214 kb on - strand, within BT0366at 449.215 kb on + strand, within BT0366at 449.215 kb on + strand, within BT0366at 449.215 kb on + strand, within BT0366at 449.216 kb on - strand, within BT0366at 449.236 kb on - strand, within BT0366at 449.361 kb on - strand, within BT0366at 449.429 kb on - strand, within BT0366at 449.481 kb on - strand, within BT0366at 449.508 kb on - strand, within BT0366at 449.508 kb on - strand, within BT0366at 449.539 kb on - strand, within BT0366at 449.615 kb on - strand, within BT0366at 449.660 kb on + strand, within BT0366at 449.678 kb on - strand, within BT0366at 449.723 kb on - strand, within BT0366at 449.755 kb on + strand, within BT0366at 449.758 kb on + strand, within BT0366at 449.761 kb on + strand, within BT0366at 449.768 kb on + strand, within BT0366at 449.892 kb on + strand, within BT0366at 449.957 kb on - strand, within BT0366at 449.957 kb on - strand, within BT0366at 450.202 kb on + strand, within BT0366at 450.202 kb on + strand, within BT0366at 450.215 kb on - strand, within BT0366at 450.406 kb on + strandat 450.417 kb on + strandat 450.499 kb on - strandat 450.614 kb on - strandat 450.618 kb on - strandat 450.621 kb on - strandat 450.631 kb on + strandat 450.655 kb on + strandat 450.655 kb on + strandat 450.656 kb on - strandat 450.770 kb on + strandat 450.814 kb on + strandat 451.031 kb on - strand, within BT0367at 451.167 kb on + strand, within BT0367at 451.221 kb on + strand, within BT0367at 451.235 kb on - strand, within BT0367at 451.248 kb on + strand, within BT0367at 451.305 kb on + strand, within BT0367at 451.307 kb on + strand, within BT0367at 451.366 kb on - strand, within BT0367at 451.380 kb on + strand, within BT0367at 451.432 kb on - strand, within BT0367at 451.553 kb on - strand, within BT0367at 451.553 kb on - strand, within BT0367at 451.583 kb on + strand, within BT0367at 451.613 kb on - strand, within BT0367at 451.649 kb on - strand, within BT0367

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Per-strain Table

Position Strand Gene LocusTag Fraction PEG (Day 3) - Cage2;Mouse1
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445,447 + BT0365 0.70 -1.7
445,501 + BT0365 0.72 -0.1
445,578 - BT0365 0.76 -2.1
445,680 - BT0365 0.80 -2.7
445,697 + BT0365 0.81 -1.1
445,790 - BT0365 0.85 -0.8
445,956 + -1.7
445,956 + -0.7
445,957 - -2.5
446,131 + -1.1
446,131 + -1.5
446,131 + -2.7
446,157 + -2.7
446,158 - -2.4
446,167 + -1.7
446,184 + -0.5
446,228 + -1.7
446,229 - -1.5
446,231 + +0.6
446,321 + -0.1
446,321 + -0.2
446,379 + +0.5
446,380 - +0.5
446,676 + -0.8
446,677 - -3.1
446,747 + -1.7
446,829 - BT0366 0.10 -0.1
447,013 + BT0366 0.15 -1.2
447,040 + BT0366 0.15 -1.8
447,075 - BT0366 0.16 -2.2
447,106 + BT0366 0.17 -2.1
447,107 - BT0366 0.17 -2.0
447,348 + BT0366 0.23 +0.3
447,481 - BT0366 0.26 -1.9
447,525 + BT0366 0.27 -1.2
447,569 - BT0366 0.28 -1.2
447,678 - BT0366 0.30 -2.2
447,802 - BT0366 0.33 -2.0
447,858 - BT0366 0.35 -0.5
447,923 - BT0366 0.36 -0.1
447,929 - BT0366 0.36 -1.8
447,977 - BT0366 0.37 -2.2
448,164 + BT0366 0.42 +0.4
448,193 + BT0366 0.42 -2.4
448,206 - BT0366 0.43 -0.1
448,234 - BT0366 0.43 -1.5
448,239 - BT0366 0.43 -0.2
448,307 + BT0366 0.45 +0.5
448,312 + BT0366 0.45 -1.2
448,312 + BT0366 0.45 -2.4
448,313 - BT0366 0.45 -0.5
448,337 - -0.5
448,408 - BT0366 0.47 -1.3
448,408 - BT0366 0.47 +1.5
448,410 - BT0366 0.47 -3.4
448,410 - BT0366 0.47 -2.5
448,418 - BT0366 0.48 +0.5
448,518 + BT0366 0.50 -2.6
448,650 - BT0366 0.53 -2.2
448,712 + BT0366 0.55 -0.8
448,713 - BT0366 0.55 -0.1
448,717 + BT0366 0.55 -1.1
448,720 - BT0366 0.55 -1.8
448,766 - BT0366 0.56 -0.2
448,848 + BT0366 0.58 -0.8
448,893 + BT0366 0.59 -0.5
448,894 - BT0366 0.59 -0.8
448,927 + BT0366 0.60 +0.2
448,936 + BT0366 0.60 -2.2
448,945 - BT0366 0.60 +0.5
449,055 + BT0366 0.63 -1.7
449,096 - BT0366 0.64 -2.9
449,213 + BT0366 0.66 -1.3
449,214 - BT0366 0.66 -0.5
449,215 + BT0366 0.66 +0.5
449,215 + BT0366 0.66 -0.2
449,215 + BT0366 0.66 -2.6
449,216 - BT0366 0.66 -1.5
449,236 - BT0366 0.67 -1.3
449,361 - BT0366 0.70 -0.8
449,429 - BT0366 0.71 -0.1
449,481 - BT0366 0.73 -2.3
449,508 - BT0366 0.73 -0.2
449,508 - BT0366 0.73 -0.8
449,539 - BT0366 0.74 -3.8
449,615 - BT0366 0.76 -0.5
449,660 + BT0366 0.77 -2.5
449,678 - BT0366 0.77 +0.0
449,723 - BT0366 0.78 -2.9
449,755 + BT0366 0.79 -3.2
449,758 + BT0366 0.79 +1.5
449,761 + BT0366 0.79 -3.7
449,768 + BT0366 0.79 -1.1
449,892 + BT0366 0.82 -2.5
449,957 - BT0366 0.84 -0.8
449,957 - BT0366 0.84 -1.5
450,202 + BT0366 0.89 -1.1
450,202 + BT0366 0.89 +0.9
450,215 - BT0366 0.90 -0.7
450,406 + -0.1
450,417 + -2.3
450,499 - -2.3
450,614 - -1.3
450,618 - -0.8
450,621 - -1.8
450,631 + -1.8
450,655 + +1.5
450,655 + -1.1
450,656 - -0.7
450,770 + +0.5
450,814 + -0.1
451,031 - BT0367 0.15 -1.3
451,167 + BT0367 0.23 +0.5
451,221 + BT0367 0.27 -0.1
451,235 - BT0367 0.28 -1.8
451,248 + BT0367 0.29 +1.8
451,305 + BT0367 0.32 -0.1
451,307 + BT0367 0.33 -1.9
451,366 - BT0367 0.36 -1.5
451,380 + BT0367 0.37 +1.5
451,432 - BT0367 0.41 -3.5
451,553 - BT0367 0.49 -0.5
451,553 - BT0367 0.49 -1.3
451,583 + BT0367 0.50 +1.5
451,613 - BT0367 0.52 -1.8
451,649 - BT0367 0.55 -1.7

Or see this region's nucleotide sequence