Strain Fitness in Sinorhizobium meliloti 1021 around SMc01095

Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01096 and SMc01095 are separated by 186 nucleotidesSMc01095 and SMc01094 are separated by 128 nucleotides SMc01096: SMc01096 - succinyl-diaminopimelate desuccinylase, at 459,723 to 460,916 SMc01096 SMc01095: SMc01095 - multidrug-efflux system transmembrane protein, at 461,103 to 464,288 SMc01095 SMc01094: SMc01094 - multidrug efflux system transmembrane protein, at 464,417 to 465,625 SMc01094 Position (kb) 461 462 463 464 465Strain fitness (log2 ratio) -1 0 1 2at 460.924 kb on - strandat 460.924 kb on - strandat 460.924 kb on - strandat 461.133 kb on + strandat 461.133 kb on + strandat 461.133 kb on + strandat 461.133 kb on + strandat 461.133 kb on + strandat 461.134 kb on - strandat 461.134 kb on - strandat 461.134 kb on - strandat 461.135 kb on + strandat 461.135 kb on + strandat 461.136 kb on - strandat 461.136 kb on - strandat 461.191 kb on + strandat 461.191 kb on + strandat 461.191 kb on + strandat 461.192 kb on - strandat 461.192 kb on - strandat 461.192 kb on - strandat 461.439 kb on - strand, within SMc01095at 461.473 kb on - strand, within SMc01095at 461.590 kb on + strand, within SMc01095at 461.590 kb on + strand, within SMc01095at 461.590 kb on + strand, within SMc01095at 461.591 kb on - strand, within SMc01095at 461.611 kb on + strand, within SMc01095at 461.612 kb on - strand, within SMc01095at 461.612 kb on - strand, within SMc01095at 461.675 kb on - strand, within SMc01095at 461.695 kb on + strand, within SMc01095at 461.696 kb on - strand, within SMc01095at 461.789 kb on + strand, within SMc01095at 461.932 kb on + strand, within SMc01095at 461.933 kb on - strand, within SMc01095at 461.962 kb on + strand, within SMc01095at 461.963 kb on - strand, within SMc01095at 461.996 kb on - strand, within SMc01095at 462.010 kb on + strand, within SMc01095at 462.010 kb on + strand, within SMc01095at 462.011 kb on - strand, within SMc01095at 462.085 kb on + strand, within SMc01095at 462.086 kb on - strand, within SMc01095at 462.086 kb on - strand, within SMc01095at 462.118 kb on + strand, within SMc01095at 462.353 kb on + strand, within SMc01095at 462.353 kb on + strand, within SMc01095at 462.353 kb on + strand, within SMc01095at 462.553 kb on + strand, within SMc01095at 462.553 kb on + strand, within SMc01095at 462.554 kb on - strand, within SMc01095at 462.632 kb on - strand, within SMc01095at 462.632 kb on - strand, within SMc01095at 462.685 kb on + strand, within SMc01095at 462.685 kb on + strand, within SMc01095at 462.686 kb on - strand, within SMc01095at 462.883 kb on + strand, within SMc01095at 462.989 kb on - strand, within SMc01095at 462.989 kb on - strand, within SMc01095at 462.989 kb on - strand, within SMc01095at 463.022 kb on + strand, within SMc01095at 463.022 kb on + strand, within SMc01095at 463.129 kb on + strand, within SMc01095at 463.129 kb on + strand, within SMc01095at 463.129 kb on + strand, within SMc01095at 463.129 kb on + strand, within SMc01095at 463.129 kb on + strand, within SMc01095at 463.130 kb on - strand, within SMc01095at 463.313 kb on - strand, within SMc01095at 463.313 kb on - strand, within SMc01095at 463.457 kb on - strand, within SMc01095at 463.777 kb on - strand, within SMc01095at 463.814 kb on - strand, within SMc01095at 463.825 kb on + strand, within SMc01095at 463.825 kb on + strand, within SMc01095at 463.826 kb on - strand, within SMc01095at 463.837 kb on + strand, within SMc01095at 464.053 kb on + strandat 464.053 kb on + strandat 464.053 kb on + strandat 464.054 kb on - strandat 464.137 kb on + strandat 464.341 kb on + strandat 464.392 kb on + strandat 464.392 kb on + strandat 464.392 kb on + strandat 464.392 kb on + strandat 464.393 kb on - strandat 464.481 kb on - strandat 464.943 kb on + strand, within SMc01094at 464.943 kb on + strand, within SMc01094at 464.944 kb on - strand, within SMc01094at 465.066 kb on + strand, within SMc01094at 465.135 kb on + strand, within SMc01094

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI
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460,924 - -0.1
460,924 - +0.8
460,924 - -1.4
461,133 + -0.7
461,133 + -0.4
461,133 + +0.7
461,133 + +0.1
461,133 + +0.9
461,134 - +0.0
461,134 - +0.4
461,134 - -0.2
461,135 + +0.6
461,135 + -0.5
461,136 - -0.3
461,136 - +0.5
461,191 + +0.4
461,191 + +0.0
461,191 + -0.9
461,192 - -0.9
461,192 - -0.1
461,192 - -1.4
461,439 - SMc01095 0.11 -0.1
461,473 - SMc01095 0.12 -0.2
461,590 + SMc01095 0.15 -0.5
461,590 + SMc01095 0.15 +0.0
461,590 + SMc01095 0.15 +1.1
461,591 - SMc01095 0.15 +0.6
461,611 + SMc01095 0.16 +0.4
461,612 - SMc01095 0.16 +0.4
461,612 - SMc01095 0.16 -0.1
461,675 - SMc01095 0.18 -0.2
461,695 + SMc01095 0.19 +0.2
461,696 - SMc01095 0.19 -0.5
461,789 + SMc01095 0.22 +0.1
461,932 + SMc01095 0.26 +0.1
461,933 - SMc01095 0.26 -0.0
461,962 + SMc01095 0.27 +0.6
461,963 - SMc01095 0.27 -0.1
461,996 - SMc01095 0.28 -0.1
462,010 + SMc01095 0.28 +1.7
462,010 + SMc01095 0.28 +0.2
462,011 - SMc01095 0.28 -0.2
462,085 + SMc01095 0.31 +0.9
462,086 - SMc01095 0.31 +0.4
462,086 - SMc01095 0.31 +0.2
462,118 + SMc01095 0.32 +0.2
462,353 + SMc01095 0.39 +0.7
462,353 + SMc01095 0.39 -0.0
462,353 + SMc01095 0.39 -1.3
462,553 + SMc01095 0.46 +0.7
462,553 + SMc01095 0.46 -0.0
462,554 - SMc01095 0.46 +0.8
462,632 - SMc01095 0.48 +0.2
462,632 - SMc01095 0.48 -0.5
462,685 + SMc01095 0.50 -0.7
462,685 + SMc01095 0.50 +0.1
462,686 - SMc01095 0.50 +0.2
462,883 + SMc01095 0.56 -0.3
462,989 - SMc01095 0.59 -0.1
462,989 - SMc01095 0.59 -0.2
462,989 - SMc01095 0.59 -0.6
463,022 + SMc01095 0.60 +0.4
463,022 + SMc01095 0.60 +0.4
463,129 + SMc01095 0.64 -0.1
463,129 + SMc01095 0.64 +0.7
463,129 + SMc01095 0.64 +0.6
463,129 + SMc01095 0.64 -0.3
463,129 + SMc01095 0.64 +0.3
463,130 - SMc01095 0.64 -0.2
463,313 - SMc01095 0.69 +1.4
463,313 - SMc01095 0.69 -1.7
463,457 - SMc01095 0.74 +2.4
463,777 - SMc01095 0.84 -0.4
463,814 - SMc01095 0.85 +0.4
463,825 + SMc01095 0.85 +0.5
463,825 + SMc01095 0.85 +0.5
463,826 - SMc01095 0.85 +0.8
463,837 + SMc01095 0.86 +0.0
464,053 + +0.8
464,053 + -0.0
464,053 + -0.1
464,054 - -0.2
464,137 + +0.1
464,341 + +0.6
464,392 + +0.1
464,392 + +0.0
464,392 + +0.1
464,392 + -0.7
464,393 - -0.4
464,481 - -0.4
464,943 + SMc01094 0.44 +0.3
464,943 + SMc01094 0.44 -0.5
464,944 - SMc01094 0.44 -1.0
465,066 + SMc01094 0.54 -0.2
465,135 + SMc01094 0.59 -0.4

Or see this region's nucleotide sequence