Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03010 and SMc03011 overlap by 1 nucleotides SMc03011 and SMc03012 overlap by 4 nucleotides SMc03012 and SMc03013 are separated by 29 nucleotides
SMc03010: SMc03010 - chemotaxis-specific methylesterase, at 708,133 to 709,182
SMc03010
SMc03011: SMc03011 - chemotaxis regulator protein, at 709,182 to 709,571
SMc03011
SMc03012: SMc03012 - chemoreceptor glutamine deamidase CheD, at 709,568 to 710,119
SMc03012
SMc03013: SMc03013 - hypothetical protein, at 710,149 to 710,523
SMc03013
Position (kb) 710
711 Strain fitness (log2 ratio) -2
-1
0
1
2 at 709.180 kb on + strand at 709.181 kb on - strand at 709.202 kb on - strand at 709.776 kb on - strand, within SMc03012 at 710.024 kb on + strand, within SMc03012 at 710.024 kb on + strand, within SMc03012 at 710.025 kb on - strand, within SMc03012 at 710.252 kb on + strand, within SMc03013 at 710.252 kb on + strand, within SMc03013 at 710.252 kb on + strand, within SMc03013 at 710.253 kb on - strand, within SMc03013 at 710.362 kb on - strand, within SMc03013 at 710.582 kb on + strand at 710.584 kb on + strand at 710.584 kb on + strand at 710.584 kb on + strand at 710.585 kb on - strand at 710.702 kb on + strand at 710.702 kb on + strand at 710.746 kb on + strand at 710.747 kb on - strand at 710.831 kb on + strand at 710.832 kb on - strand at 710.832 kb on - strand at 710.832 kb on - strand at 710.832 kb on - strand at 710.832 kb on - strand at 710.832 kb on - strand at 710.832 kb on - strand at 710.835 kb on + strand at 710.835 kb on + strand at 710.835 kb on + strand at 710.835 kb on + strand at 710.835 kb on + strand at 710.835 kb on + strand at 710.835 kb on + strand at 710.835 kb on + strand at 710.835 kb on + strand at 710.835 kb on + strand at 710.835 kb on + strand at 710.836 kb on - strand at 710.836 kb on - strand at 710.836 kb on - strand at 710.836 kb on - strand at 710.836 kb on - strand at 710.836 kb on - strand at 710.836 kb on - strand at 710.836 kb on - strand at 710.836 kb on - strand at 710.836 kb on - strand at 710.836 kb on - strand at 710.836 kb on - strand at 710.837 kb on + strand at 710.838 kb on - strand at 710.839 kb on + strand at 710.839 kb on + strand at 710.840 kb on - strand at 710.841 kb on - strand at 710.845 kb on - strand at 710.922 kb on - strand at 710.948 kb on - strand at 710.948 kb on - strand at 711.303 kb on + strand at 711.303 kb on + strand at 711.303 kb on + strand at 711.303 kb on + strand at 711.303 kb on + strand at 711.303 kb on + strand at 711.303 kb on + strand at 711.400 kb on - strand at 711.400 kb on - strand at 711.400 kb on - strand at 711.439 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 709,180 + -1.0 709,181 - -0.1 709,202 - +0.3 709,776 - SMc03012 0.38 -0.5 710,024 + SMc03012 0.83 -0.4 710,024 + SMc03012 0.83 +0.1 710,025 - SMc03012 0.83 +1.0 710,252 + SMc03013 0.27 -0.8 710,252 + SMc03013 0.27 +0.1 710,252 + SMc03013 0.27 -2.0 710,253 - SMc03013 0.28 -0.5 710,362 - SMc03013 0.57 -0.4 710,582 + -0.0 710,584 + +0.5 710,584 + +1.4 710,584 + +0.0 710,585 - -0.0 710,702 + -0.6 710,702 + -0.1 710,746 + -0.0 710,747 - -0.9 710,831 + +0.0 710,832 - -0.1 710,832 - +0.3 710,832 - -0.6 710,832 - +0.6 710,832 - +0.3 710,832 - +0.4 710,832 - -0.1 710,835 + -0.4 710,835 + +1.6 710,835 + -0.4 710,835 + -0.0 710,835 + +1.2 710,835 + -0.7 710,835 + +0.4 710,835 + +0.4 710,835 + -0.7 710,835 + -0.4 710,835 + +0.8 710,836 - +0.0 710,836 - +0.5 710,836 - +0.1 710,836 - -0.4 710,836 - -0.2 710,836 - +0.0 710,836 - -0.4 710,836 - +0.8 710,836 - +0.2 710,836 - -0.0 710,836 - -0.1 710,836 - -0.7 710,837 + +2.3 710,838 - +0.4 710,839 + +0.3 710,839 + +0.3 710,840 - +0.7 710,841 - +0.1 710,845 - -0.5 710,922 - -0.8 710,948 - -0.1 710,948 - +0.1 711,303 + +0.1 711,303 + +0.7 711,303 + -0.4 711,303 + +0.3 711,303 + +0.8 711,303 + -0.8 711,303 + -0.3 711,400 - -0.1 711,400 - +0.3 711,400 - +0.9 711,439 + -1.6
Or see this region's nucleotide sequence