Strain Fitness in Sinorhizobium meliloti 1021 around SMc00653

Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00654 and SMc00653 are separated by 374 nucleotidesSMc00653 and SMc00652 are separated by 242 nucleotides SMc00654: SMc00654 - response regulator,controls chromosomal replication initiation protein, at 2,922,080 to 2,922,781 SMc00654 SMc00653: SMc00653 - 2-component receiver domain-containing protein, at 2,923,156 to 2,923,524 SMc00653 SMc00652: SMc00652 - hypothetical protein, at 2,923,767 to 2,924,432 SMc00652 Position (kb) 2923 2924Strain fitness (log2 ratio) -3 -2 -1 0 1at 2922.900 kb on + strandat 2922.901 kb on - strandat 2922.914 kb on + strandat 2922.914 kb on + strandat 2922.914 kb on + strandat 2922.915 kb on - strandat 2922.915 kb on - strandat 2922.915 kb on - strandat 2923.286 kb on + strand, within SMc00653at 2923.287 kb on - strand, within SMc00653at 2923.287 kb on - strand, within SMc00653at 2923.289 kb on + strand, within SMc00653at 2923.289 kb on + strand, within SMc00653at 2923.289 kb on + strand, within SMc00653at 2923.290 kb on - strand, within SMc00653at 2923.290 kb on - strand, within SMc00653at 2923.327 kb on - strand, within SMc00653at 2923.476 kb on + strand, within SMc00653at 2923.476 kb on + strand, within SMc00653at 2923.573 kb on - strandat 2923.573 kb on - strandat 2923.573 kb on - strandat 2923.791 kb on + strandat 2924.520 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI
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2,922,900 + +0.3
2,922,901 - +0.4
2,922,914 + +0.7
2,922,914 + -1.1
2,922,914 + +0.2
2,922,915 - -0.1
2,922,915 - +0.7
2,922,915 - -0.3
2,923,286 + SMc00653 0.35 -0.5
2,923,287 - SMc00653 0.36 -0.4
2,923,287 - SMc00653 0.36 -0.0
2,923,289 + SMc00653 0.36 -3.0
2,923,289 + SMc00653 0.36 -0.6
2,923,289 + SMc00653 0.36 -0.0
2,923,290 - SMc00653 0.36 +0.6
2,923,290 - SMc00653 0.36 +1.0
2,923,327 - SMc00653 0.46 -0.1
2,923,476 + SMc00653 0.87 -0.1
2,923,476 + SMc00653 0.87 -0.1
2,923,573 - +0.2
2,923,573 - -1.2
2,923,573 - -0.2
2,923,791 + -0.7
2,924,520 - +0.7

Or see this region's nucleotide sequence