Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21061

Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b21060 and SM_b21061 are separated by 22 nucleotidesSM_b21061 and SM_b21062 are separated by 21 nucleotides SM_b21060: SM_b21060 - sugar nucleotide epimerase dehydratase, at 693,472 to 694,521 _b21060 SM_b21061: SM_b21061 - NDP-hexose 3-C-methyltransferase, at 694,544 to 695,791 _b21061 SM_b21062: SM_b21062 - NDP-hexose methyltransferase, at 695,813 to 697,012 _b21062 Position (kb) 694 695 696Strain fitness (log2 ratio) -2 -1 0 1at 693.677 kb on + strand, within SM_b21060at 693.677 kb on + strand, within SM_b21060at 693.677 kb on + strand, within SM_b21060at 693.677 kb on + strand, within SM_b21060at 693.678 kb on - strand, within SM_b21060at 693.678 kb on - strand, within SM_b21060at 693.678 kb on - strand, within SM_b21060at 693.826 kb on + strand, within SM_b21060at 693.827 kb on - strand, within SM_b21060at 693.827 kb on - strand, within SM_b21060at 693.886 kb on + strand, within SM_b21060at 693.887 kb on - strand, within SM_b21060at 693.951 kb on + strand, within SM_b21060at 693.951 kb on + strand, within SM_b21060at 693.952 kb on - strand, within SM_b21060at 693.976 kb on + strand, within SM_b21060at 694.055 kb on - strand, within SM_b21060at 694.105 kb on - strand, within SM_b21060at 694.105 kb on - strand, within SM_b21060at 694.117 kb on + strand, within SM_b21060at 694.117 kb on + strand, within SM_b21060at 694.118 kb on - strand, within SM_b21060at 694.118 kb on - strand, within SM_b21060at 694.118 kb on - strand, within SM_b21060at 694.120 kb on - strand, within SM_b21060at 694.120 kb on - strand, within SM_b21060at 694.192 kb on + strand, within SM_b21060at 694.192 kb on + strand, within SM_b21060at 694.193 kb on - strand, within SM_b21060at 694.303 kb on + strand, within SM_b21060at 694.304 kb on - strand, within SM_b21060at 694.370 kb on - strand, within SM_b21060at 694.370 kb on - strand, within SM_b21060at 694.442 kb on + strandat 694.442 kb on + strandat 694.442 kb on + strandat 694.442 kb on + strandat 694.442 kb on + strandat 694.443 kb on - strandat 694.443 kb on - strandat 694.481 kb on + strandat 694.481 kb on + strandat 694.501 kb on - strandat 694.519 kb on + strandat 694.571 kb on - strandat 694.787 kb on + strand, within SM_b21061at 694.787 kb on + strand, within SM_b21061at 694.787 kb on + strand, within SM_b21061at 694.787 kb on + strand, within SM_b21061at 694.788 kb on - strand, within SM_b21061at 694.813 kb on - strand, within SM_b21061at 694.919 kb on + strand, within SM_b21061at 694.920 kb on - strand, within SM_b21061at 694.920 kb on - strand, within SM_b21061at 694.989 kb on + strand, within SM_b21061at 695.126 kb on - strand, within SM_b21061at 695.127 kb on + strand, within SM_b21061at 695.127 kb on + strand, within SM_b21061at 695.174 kb on + strand, within SM_b21061at 695.174 kb on + strand, within SM_b21061at 695.174 kb on + strand, within SM_b21061at 695.175 kb on - strand, within SM_b21061at 695.175 kb on - strand, within SM_b21061at 695.175 kb on - strand, within SM_b21061at 695.234 kb on + strand, within SM_b21061at 695.235 kb on - strand, within SM_b21061at 695.235 kb on - strand, within SM_b21061at 695.254 kb on - strand, within SM_b21061at 695.282 kb on + strand, within SM_b21061at 695.282 kb on + strand, within SM_b21061at 695.333 kb on + strand, within SM_b21061at 695.334 kb on - strand, within SM_b21061at 695.334 kb on - strand, within SM_b21061at 695.407 kb on + strand, within SM_b21061at 695.408 kb on - strand, within SM_b21061at 695.408 kb on - strand, within SM_b21061at 695.418 kb on - strand, within SM_b21061at 695.575 kb on - strand, within SM_b21061at 695.615 kb on + strand, within SM_b21061at 695.615 kb on + strand, within SM_b21061at 695.615 kb on + strand, within SM_b21061at 695.616 kb on - strand, within SM_b21061at 695.616 kb on - strand, within SM_b21061at 695.616 kb on - strand, within SM_b21061at 695.616 kb on - strand, within SM_b21061at 695.617 kb on + strand, within SM_b21061at 695.617 kb on + strand, within SM_b21061at 695.617 kb on + strand, within SM_b21061at 695.617 kb on + strand, within SM_b21061at 695.617 kb on + strand, within SM_b21061at 695.618 kb on - strand, within SM_b21061at 695.678 kb on + strandat 695.679 kb on - strandat 695.796 kb on - strandat 695.895 kb on + strandat 695.923 kb on - strandat 695.968 kb on + strand, within SM_b21062at 696.069 kb on - strand, within SM_b21062at 696.139 kb on + strand, within SM_b21062at 696.139 kb on + strand, within SM_b21062at 696.140 kb on - strand, within SM_b21062at 696.143 kb on + strand, within SM_b21062at 696.143 kb on + strand, within SM_b21062at 696.143 kb on + strand, within SM_b21062at 696.143 kb on + strand, within SM_b21062at 696.143 kb on + strand, within SM_b21062at 696.143 kb on + strand, within SM_b21062at 696.143 kb on + strand, within SM_b21062at 696.143 kb on + strand, within SM_b21062at 696.144 kb on - strand, within SM_b21062at 696.144 kb on - strand, within SM_b21062at 696.144 kb on - strand, within SM_b21062at 696.144 kb on - strand, within SM_b21062at 696.144 kb on - strand, within SM_b21062at 696.144 kb on - strand, within SM_b21062at 696.144 kb on - strand, within SM_b21062at 696.361 kb on - strand, within SM_b21062at 696.433 kb on - strand, within SM_b21062at 696.437 kb on + strand, within SM_b21062at 696.437 kb on + strand, within SM_b21062at 696.461 kb on + strand, within SM_b21062at 696.461 kb on + strand, within SM_b21062at 696.497 kb on + strand, within SM_b21062at 696.513 kb on - strand, within SM_b21062at 696.596 kb on + strand, within SM_b21062at 696.597 kb on - strand, within SM_b21062

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI
remove
693,677 + SM_b21060 0.20 -0.2
693,677 + SM_b21060 0.20 -0.4
693,677 + SM_b21060 0.20 +0.8
693,677 + SM_b21060 0.20 -1.3
693,678 - SM_b21060 0.20 -0.5
693,678 - SM_b21060 0.20 +0.4
693,678 - SM_b21060 0.20 -0.3
693,826 + SM_b21060 0.34 -0.5
693,827 - SM_b21060 0.34 -0.1
693,827 - SM_b21060 0.34 -0.3
693,886 + SM_b21060 0.39 -0.1
693,887 - SM_b21060 0.40 -0.4
693,951 + SM_b21060 0.46 -1.0
693,951 + SM_b21060 0.46 -0.1
693,952 - SM_b21060 0.46 -0.6
693,976 + SM_b21060 0.48 +0.2
694,055 - SM_b21060 0.56 +0.0
694,105 - SM_b21060 0.60 -0.2
694,105 - SM_b21060 0.60 -1.2
694,117 + SM_b21060 0.61 -0.5
694,117 + SM_b21060 0.61 -0.9
694,118 - SM_b21060 0.62 +0.3
694,118 - SM_b21060 0.62 +0.5
694,118 - SM_b21060 0.62 +0.5
694,120 - SM_b21060 0.62 -0.3
694,120 - SM_b21060 0.62 -0.3
694,192 + SM_b21060 0.69 -0.9
694,192 + SM_b21060 0.69 +0.1
694,193 - SM_b21060 0.69 -0.0
694,303 + SM_b21060 0.79 -0.5
694,304 - SM_b21060 0.79 +0.3
694,370 - SM_b21060 0.86 -0.8
694,370 - SM_b21060 0.86 +0.4
694,442 + -0.3
694,442 + -0.0
694,442 + -0.2
694,442 + -0.2
694,442 + +0.8
694,443 - -0.3
694,443 - +0.8
694,481 + -0.0
694,481 + -0.1
694,501 - -0.5
694,519 + -0.4
694,571 - -0.5
694,787 + SM_b21061 0.19 -0.3
694,787 + SM_b21061 0.19 -1.5
694,787 + SM_b21061 0.19 -0.1
694,787 + SM_b21061 0.19 +0.2
694,788 - SM_b21061 0.20 +0.8
694,813 - SM_b21061 0.22 -0.1
694,919 + SM_b21061 0.30 +0.1
694,920 - SM_b21061 0.30 +0.3
694,920 - SM_b21061 0.30 -0.5
694,989 + SM_b21061 0.36 -0.7
695,126 - SM_b21061 0.47 +0.3
695,127 + SM_b21061 0.47 +0.3
695,127 + SM_b21061 0.47 -0.0
695,174 + SM_b21061 0.50 +0.0
695,174 + SM_b21061 0.50 -1.1
695,174 + SM_b21061 0.50 -0.6
695,175 - SM_b21061 0.51 -0.2
695,175 - SM_b21061 0.51 -0.0
695,175 - SM_b21061 0.51 -0.6
695,234 + SM_b21061 0.55 -0.1
695,235 - SM_b21061 0.55 +0.2
695,235 - SM_b21061 0.55 -1.0
695,254 - SM_b21061 0.57 -0.3
695,282 + SM_b21061 0.59 -0.1
695,282 + SM_b21061 0.59 -0.3
695,333 + SM_b21061 0.63 -0.2
695,334 - SM_b21061 0.63 -1.1
695,334 - SM_b21061 0.63 -0.1
695,407 + SM_b21061 0.69 -0.3
695,408 - SM_b21061 0.69 -0.3
695,408 - SM_b21061 0.69 -1.0
695,418 - SM_b21061 0.70 -2.4
695,575 - SM_b21061 0.83 -0.1
695,615 + SM_b21061 0.86 -0.1
695,615 + SM_b21061 0.86 -0.4
695,615 + SM_b21061 0.86 -0.1
695,616 - SM_b21061 0.86 -0.6
695,616 - SM_b21061 0.86 -0.1
695,616 - SM_b21061 0.86 -1.1
695,616 - SM_b21061 0.86 -0.5
695,617 + SM_b21061 0.86 -0.5
695,617 + SM_b21061 0.86 -0.3
695,617 + SM_b21061 0.86 +0.4
695,617 + SM_b21061 0.86 +0.4
695,617 + SM_b21061 0.86 -0.7
695,618 - SM_b21061 0.86 -0.6
695,678 + -0.2
695,679 - -0.1
695,796 - -1.0
695,895 + -0.2
695,923 - +0.3
695,968 + SM_b21062 0.13 -0.4
696,069 - SM_b21062 0.21 -0.5
696,139 + SM_b21062 0.27 +0.0
696,139 + SM_b21062 0.27 +1.0
696,140 - SM_b21062 0.27 -1.2
696,143 + SM_b21062 0.28 -1.1
696,143 + SM_b21062 0.28 -0.3
696,143 + SM_b21062 0.28 +0.3
696,143 + SM_b21062 0.28 -0.5
696,143 + SM_b21062 0.28 -2.3
696,143 + SM_b21062 0.28 -0.3
696,143 + SM_b21062 0.28 +0.2
696,143 + SM_b21062 0.28 -0.5
696,144 - SM_b21062 0.28 -0.3
696,144 - SM_b21062 0.28 -0.3
696,144 - SM_b21062 0.28 +0.3
696,144 - SM_b21062 0.28 -0.6
696,144 - SM_b21062 0.28 -0.1
696,144 - SM_b21062 0.28 +0.1
696,144 - SM_b21062 0.28 +0.0
696,361 - SM_b21062 0.46 -0.7
696,433 - SM_b21062 0.52 -0.2
696,437 + SM_b21062 0.52 -0.3
696,437 + SM_b21062 0.52 +0.1
696,461 + SM_b21062 0.54 +1.3
696,461 + SM_b21062 0.54 +0.1
696,497 + SM_b21062 0.57 -0.6
696,513 - SM_b21062 0.58 +0.2
696,596 + SM_b21062 0.65 +0.1
696,597 - SM_b21062 0.65 -0.3

Or see this region's nucleotide sequence