Experiment: R2A-HEPES with volatiles from Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21048 and SM_b21049 are separated by 45 nucleotides SM_b21049 and SM_b21050 are separated by 212 nucleotides SM_b21050 and SM_b21051 are separated by 150 nucleotides
SM_b21048: SM_b21048 - hypothetical protein, at 680,362 to 681,807
_b21048
SM_b21049: SM_b21049 - hypothetical protein, at 681,853 to 682,011
_b21049
SM_b21050: SM_b21050 - PST type surface saccharide translocase, ExoT protein, at 682,224 to 683,777
_b21050
SM_b21051: SM_b21051 - udpglucosegdpmannose dehydrogenase, at 683,928 to 685,277
_b21051
Position (kb) 682
683
684 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 681.294 kb on + strand, within SM_b21048 at 681.294 kb on + strand, within SM_b21048 at 681.294 kb on + strand, within SM_b21048 at 681.321 kb on + strand, within SM_b21048 at 681.349 kb on + strand, within SM_b21048 at 681.359 kb on - strand, within SM_b21048 at 681.359 kb on - strand, within SM_b21048 at 681.359 kb on - strand, within SM_b21048 at 681.392 kb on + strand, within SM_b21048 at 681.472 kb on + strand, within SM_b21048 at 681.472 kb on + strand, within SM_b21048 at 681.473 kb on - strand, within SM_b21048 at 681.527 kb on + strand, within SM_b21048 at 681.528 kb on - strand, within SM_b21048 at 681.528 kb on - strand, within SM_b21048 at 681.528 kb on - strand, within SM_b21048 at 681.647 kb on + strand, within SM_b21048 at 681.647 kb on + strand, within SM_b21048 at 681.648 kb on - strand, within SM_b21048 at 681.648 kb on - strand, within SM_b21048 at 681.749 kb on + strand at 681.750 kb on - strand at 681.753 kb on - strand at 681.753 kb on - strand at 681.753 kb on - strand at 681.753 kb on - strand at 681.753 kb on - strand at 681.758 kb on - strand at 681.758 kb on - strand at 681.758 kb on - strand at 681.761 kb on - strand at 681.782 kb on - strand at 681.855 kb on - strand at 681.920 kb on + strand, within SM_b21049 at 681.921 kb on - strand, within SM_b21049 at 681.921 kb on - strand, within SM_b21049 at 681.942 kb on - strand, within SM_b21049 at 682.037 kb on - strand at 682.037 kb on - strand at 682.083 kb on - strand at 682.128 kb on + strand at 682.128 kb on + strand at 682.129 kb on - strand at 682.209 kb on + strand at 682.209 kb on + strand at 682.231 kb on + strand at 682.232 kb on - strand at 682.232 kb on - strand at 682.232 kb on - strand at 682.232 kb on - strand at 682.252 kb on + strand at 682.265 kb on - strand at 682.292 kb on - strand at 682.441 kb on + strand, within SM_b21050 at 682.441 kb on + strand, within SM_b21050 at 682.442 kb on - strand, within SM_b21050 at 682.442 kb on - strand, within SM_b21050 at 682.495 kb on + strand, within SM_b21050 at 682.496 kb on - strand, within SM_b21050 at 682.496 kb on - strand, within SM_b21050 at 682.693 kb on + strand, within SM_b21050 at 682.694 kb on - strand, within SM_b21050 at 682.880 kb on - strand, within SM_b21050 at 682.923 kb on - strand, within SM_b21050 at 682.929 kb on + strand, within SM_b21050 at 682.990 kb on + strand, within SM_b21050 at 683.108 kb on - strand, within SM_b21050 at 683.108 kb on - strand at 683.108 kb on - strand, within SM_b21050 at 683.323 kb on + strand, within SM_b21050 at 683.323 kb on + strand, within SM_b21050 at 683.361 kb on + strand, within SM_b21050 at 683.361 kb on + strand, within SM_b21050 at 683.415 kb on + strand, within SM_b21050 at 683.415 kb on + strand, within SM_b21050 at 683.416 kb on - strand, within SM_b21050 at 683.416 kb on - strand, within SM_b21050 at 683.416 kb on - strand, within SM_b21050 at 683.418 kb on - strand, within SM_b21050 at 683.459 kb on + strand, within SM_b21050 at 683.474 kb on - strand, within SM_b21050 at 683.474 kb on - strand, within SM_b21050 at 683.526 kb on + strand, within SM_b21050 at 683.526 kb on + strand, within SM_b21050 at 683.526 kb on + strand, within SM_b21050 at 683.531 kb on - strand, within SM_b21050 at 683.531 kb on - strand, within SM_b21050 at 683.531 kb on - strand, within SM_b21050 at 683.537 kb on + strand, within SM_b21050 at 683.537 kb on + strand, within SM_b21050 at 683.538 kb on - strand, within SM_b21050 at 683.538 kb on - strand, within SM_b21050 at 683.538 kb on - strand, within SM_b21050 at 683.546 kb on + strand, within SM_b21050 at 683.618 kb on + strand, within SM_b21050 at 683.619 kb on - strand, within SM_b21050 at 683.700 kb on + strand at 683.700 kb on + strand at 683.700 kb on + strand at 683.700 kb on + strand at 683.701 kb on - strand at 683.701 kb on - strand at 683.701 kb on - strand at 683.701 kb on - strand at 683.701 kb on - strand at 683.761 kb on + strand at 683.761 kb on + strand at 683.761 kb on + strand at 683.762 kb on - strand at 683.858 kb on - strand at 683.858 kb on - strand at 683.858 kb on - strand at 683.883 kb on + strand at 683.884 kb on - strand at 683.899 kb on + strand at 683.900 kb on - strand at 683.930 kb on - strand at 683.930 kb on - strand at 683.937 kb on + strand at 683.938 kb on - strand at 683.945 kb on + strand at 683.945 kb on + strand at 683.946 kb on - strand at 683.946 kb on - strand at 684.089 kb on + strand, within SM_b21051 at 684.090 kb on - strand, within SM_b21051 at 684.111 kb on + strand, within SM_b21051 at 684.112 kb on - strand, within SM_b21051 at 684.121 kb on + strand, within SM_b21051 at 684.122 kb on - strand, within SM_b21051 at 684.147 kb on + strand, within SM_b21051 at 684.147 kb on + strand, within SM_b21051 at 684.148 kb on - strand, within SM_b21051 at 684.151 kb on + strand, within SM_b21051 at 684.152 kb on - strand, within SM_b21051 at 684.163 kb on + strand, within SM_b21051 at 684.164 kb on - strand, within SM_b21051 at 684.227 kb on + strand, within SM_b21051 at 684.247 kb on + strand, within SM_b21051 at 684.247 kb on + strand, within SM_b21051 at 684.248 kb on - strand, within SM_b21051 at 684.265 kb on - strand, within SM_b21051 at 684.334 kb on + strand, within SM_b21051 at 684.334 kb on + strand, within SM_b21051 at 684.335 kb on - strand, within SM_b21051 at 684.366 kb on + strand, within SM_b21051 at 684.366 kb on + strand, within SM_b21051 at 684.367 kb on - strand, within SM_b21051 at 684.372 kb on + strand, within SM_b21051 at 684.387 kb on + strand, within SM_b21051 at 684.388 kb on - strand, within SM_b21051 at 684.388 kb on - strand, within SM_b21051 at 684.395 kb on - strand, within SM_b21051 at 684.418 kb on + strand, within SM_b21051 at 684.419 kb on - strand, within SM_b21051 at 684.476 kb on + strand, within SM_b21051 at 684.477 kb on - strand, within SM_b21051 at 684.477 kb on - strand, within SM_b21051 at 684.477 kb on - strand, within SM_b21051 at 684.478 kb on + strand, within SM_b21051 at 684.479 kb on - strand, within SM_b21051 at 684.588 kb on + strand, within SM_b21051 at 684.589 kb on - strand, within SM_b21051 at 684.589 kb on - strand, within SM_b21051 at 684.600 kb on + strand, within SM_b21051 at 684.600 kb on + strand, within SM_b21051 at 684.664 kb on + strand, within SM_b21051 at 684.664 kb on + strand, within SM_b21051 at 684.665 kb on - strand, within SM_b21051 at 684.665 kb on - strand, within SM_b21051 at 684.773 kb on - strand, within SM_b21051
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES with volatiles from Trichoderma atroviridae IMI remove 681,294 + SM_b21048 0.64 +0.7 681,294 + SM_b21048 0.64 -0.4 681,294 + SM_b21048 0.64 +0.0 681,321 + SM_b21048 0.66 -0.6 681,349 + SM_b21048 0.68 +0.6 681,359 - SM_b21048 0.69 +0.3 681,359 - SM_b21048 0.69 -0.2 681,359 - SM_b21048 0.69 +0.0 681,392 + SM_b21048 0.71 -0.2 681,472 + SM_b21048 0.77 -1.2 681,472 + SM_b21048 0.77 +0.2 681,473 - SM_b21048 0.77 +0.4 681,527 + SM_b21048 0.81 +0.1 681,528 - SM_b21048 0.81 +0.2 681,528 - SM_b21048 0.81 -0.6 681,528 - SM_b21048 0.81 -0.3 681,647 + SM_b21048 0.89 +2.3 681,647 + SM_b21048 0.89 -0.1 681,648 - SM_b21048 0.89 -1.7 681,648 - SM_b21048 0.89 -0.3 681,749 + +0.1 681,750 - +0.7 681,753 - -2.2 681,753 - +1.4 681,753 - +0.2 681,753 - +0.6 681,753 - +0.2 681,758 - +0.6 681,758 - +0.0 681,758 - -0.0 681,761 - +0.1 681,782 - -0.3 681,855 - -0.7 681,920 + SM_b21049 0.42 +0.1 681,921 - SM_b21049 0.43 -0.0 681,921 - SM_b21049 0.43 +1.3 681,942 - SM_b21049 0.56 -1.3 682,037 - -1.7 682,037 - +0.2 682,083 - -0.1 682,128 + +0.6 682,128 + +0.3 682,129 - +1.0 682,209 + -0.3 682,209 + -0.1 682,231 + -0.3 682,232 - +0.3 682,232 - -0.2 682,232 - +0.4 682,232 - -0.5 682,252 + +0.3 682,265 - +0.3 682,292 - +0.2 682,441 + SM_b21050 0.14 -0.7 682,441 + SM_b21050 0.14 -0.4 682,442 - SM_b21050 0.14 +0.5 682,442 - SM_b21050 0.14 -0.1 682,495 + SM_b21050 0.17 -0.2 682,496 - SM_b21050 0.18 +0.1 682,496 - SM_b21050 0.18 -0.2 682,693 + SM_b21050 0.30 -0.1 682,694 - SM_b21050 0.30 -0.7 682,880 - SM_b21050 0.42 +1.3 682,923 - SM_b21050 0.45 -0.5 682,929 + SM_b21050 0.45 -0.0 682,990 + SM_b21050 0.49 -0.0 683,108 - SM_b21050 0.57 -0.4 683,108 - -0.3 683,108 - SM_b21050 0.57 -1.5 683,323 + SM_b21050 0.71 +0.4 683,323 + SM_b21050 0.71 -0.1 683,361 + SM_b21050 0.73 +0.0 683,361 + SM_b21050 0.73 -0.3 683,415 + SM_b21050 0.77 -0.3 683,415 + SM_b21050 0.77 -1.1 683,416 - SM_b21050 0.77 -0.9 683,416 - SM_b21050 0.77 -0.3 683,416 - SM_b21050 0.77 +0.0 683,418 - SM_b21050 0.77 -0.3 683,459 + SM_b21050 0.79 -0.7 683,474 - SM_b21050 0.80 -0.3 683,474 - SM_b21050 0.80 -0.2 683,526 + SM_b21050 0.84 -0.7 683,526 + SM_b21050 0.84 -0.9 683,526 + SM_b21050 0.84 -0.5 683,531 - SM_b21050 0.84 -0.6 683,531 - SM_b21050 0.84 +0.3 683,531 - SM_b21050 0.84 -5.5 683,537 + SM_b21050 0.84 +0.4 683,537 + SM_b21050 0.84 -0.0 683,538 - SM_b21050 0.85 +0.8 683,538 - SM_b21050 0.85 +0.3 683,538 - SM_b21050 0.85 +0.1 683,546 + SM_b21050 0.85 -1.3 683,618 + SM_b21050 0.90 -0.1 683,619 - SM_b21050 0.90 +0.5 683,700 + -0.9 683,700 + -0.0 683,700 + -0.2 683,700 + +0.1 683,701 - +0.5 683,701 - -0.2 683,701 - +1.0 683,701 - +0.0 683,701 - -0.7 683,761 + -0.1 683,761 + -0.9 683,761 + -0.2 683,762 - -0.5 683,858 - +2.1 683,858 - +0.1 683,858 - -0.4 683,883 + -0.5 683,884 - +0.2 683,899 + -0.4 683,900 - +0.0 683,930 - +0.3 683,930 - -0.6 683,937 + -0.1 683,938 - -1.0 683,945 + -0.0 683,945 + +0.1 683,946 - -1.1 683,946 - -0.4 684,089 + SM_b21051 0.12 +0.3 684,090 - SM_b21051 0.12 +0.7 684,111 + SM_b21051 0.14 -0.3 684,112 - SM_b21051 0.14 -0.4 684,121 + SM_b21051 0.14 -0.5 684,122 - SM_b21051 0.14 +0.3 684,147 + SM_b21051 0.16 +0.0 684,147 + SM_b21051 0.16 -0.1 684,148 - SM_b21051 0.16 +0.2 684,151 + SM_b21051 0.17 -0.3 684,152 - SM_b21051 0.17 +0.6 684,163 + SM_b21051 0.17 +0.4 684,164 - SM_b21051 0.17 +0.4 684,227 + SM_b21051 0.22 -1.4 684,247 + SM_b21051 0.24 -1.8 684,247 + SM_b21051 0.24 -0.9 684,248 - SM_b21051 0.24 -0.8 684,265 - SM_b21051 0.25 +0.1 684,334 + SM_b21051 0.30 -0.6 684,334 + SM_b21051 0.30 -0.3 684,335 - SM_b21051 0.30 -1.5 684,366 + SM_b21051 0.32 -0.3 684,366 + SM_b21051 0.32 +0.4 684,367 - SM_b21051 0.33 -0.7 684,372 + SM_b21051 0.33 -0.2 684,387 + SM_b21051 0.34 +0.3 684,388 - SM_b21051 0.34 +0.8 684,388 - SM_b21051 0.34 -0.5 684,395 - SM_b21051 0.35 +0.1 684,418 + SM_b21051 0.36 -0.3 684,419 - SM_b21051 0.36 +0.9 684,476 + SM_b21051 0.41 -0.2 684,477 - SM_b21051 0.41 +1.0 684,477 - SM_b21051 0.41 -0.3 684,477 - SM_b21051 0.41 -0.4 684,478 + SM_b21051 0.41 +0.4 684,479 - SM_b21051 0.41 -0.6 684,588 + SM_b21051 0.49 -0.4 684,589 - SM_b21051 0.49 -1.0 684,589 - SM_b21051 0.49 -0.8 684,600 + SM_b21051 0.50 -0.1 684,600 + SM_b21051 0.50 +0.2 684,664 + SM_b21051 0.55 +0.6 684,664 + SM_b21051 0.55 +0.3 684,665 - SM_b21051 0.55 -0.8 684,665 - SM_b21051 0.55 -1.2 684,773 - SM_b21051 0.63 -0.1
Or see this region's nucleotide sequence