Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13570

Experiment: D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS13565 and BWI76_RS13570 are separated by 232 nucleotidesBWI76_RS13570 and BWI76_RS13575 are separated by 304 nucleotides BWI76_RS13565: BWI76_RS13565 - MFS transporter, at 2,827,645 to 2,828,955 _RS13565 BWI76_RS13570: BWI76_RS13570 - mandelate racemase/muconate lactonizing protein, at 2,829,188 to 2,830,384 _RS13570 BWI76_RS13575: BWI76_RS13575 - sugar binding transcriptional regulator, LacI family protein, at 2,830,689 to 2,831,693 _RS13575 Position (kb) 2829 2830 2831Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2828.209 kb on + strand, within BWI76_RS13565at 2828.209 kb on + strand, within BWI76_RS13565at 2828.212 kb on - strand, within BWI76_RS13565at 2828.212 kb on - strand, within BWI76_RS13565at 2828.217 kb on - strand, within BWI76_RS13565at 2828.228 kb on - strand, within BWI76_RS13565at 2828.228 kb on - strand, within BWI76_RS13565at 2828.263 kb on - strand, within BWI76_RS13565at 2828.263 kb on - strand, within BWI76_RS13565at 2828.263 kb on - strand, within BWI76_RS13565at 2828.263 kb on - strand, within BWI76_RS13565at 2828.272 kb on + strand, within BWI76_RS13565at 2828.281 kb on - strand, within BWI76_RS13565at 2828.307 kb on - strand, within BWI76_RS13565at 2828.314 kb on + strand, within BWI76_RS13565at 2828.372 kb on - strand, within BWI76_RS13565at 2828.383 kb on - strand, within BWI76_RS13565at 2828.384 kb on - strand, within BWI76_RS13565at 2828.406 kb on + strand, within BWI76_RS13565at 2828.414 kb on - strand, within BWI76_RS13565at 2828.420 kb on - strand, within BWI76_RS13565at 2828.449 kb on + strand, within BWI76_RS13565at 2828.498 kb on + strand, within BWI76_RS13565at 2828.498 kb on + strand, within BWI76_RS13565at 2828.498 kb on + strand, within BWI76_RS13565at 2828.498 kb on + strand, within BWI76_RS13565at 2828.498 kb on + strandat 2828.498 kb on + strand, within BWI76_RS13565at 2828.500 kb on + strand, within BWI76_RS13565at 2828.506 kb on - strand, within BWI76_RS13565at 2828.506 kb on - strand, within BWI76_RS13565at 2828.508 kb on - strand, within BWI76_RS13565at 2828.513 kb on + strand, within BWI76_RS13565at 2828.513 kb on + strand, within BWI76_RS13565at 2828.513 kb on + strand, within BWI76_RS13565at 2828.513 kb on + strand, within BWI76_RS13565at 2828.513 kb on + strand, within BWI76_RS13565at 2828.515 kb on + strand, within BWI76_RS13565at 2828.521 kb on - strand, within BWI76_RS13565at 2828.521 kb on - strand, within BWI76_RS13565at 2828.523 kb on - strand, within BWI76_RS13565at 2828.527 kb on + strand, within BWI76_RS13565at 2828.528 kb on - strand, within BWI76_RS13565at 2828.571 kb on + strand, within BWI76_RS13565at 2828.583 kb on - strand, within BWI76_RS13565at 2828.583 kb on - strand, within BWI76_RS13565at 2828.590 kb on + strand, within BWI76_RS13565at 2828.590 kb on + strand, within BWI76_RS13565at 2828.597 kb on - strand, within BWI76_RS13565at 2828.598 kb on - strand, within BWI76_RS13565at 2828.598 kb on - strand, within BWI76_RS13565at 2828.656 kb on + strand, within BWI76_RS13565at 2828.656 kb on + strandat 2828.656 kb on + strand, within BWI76_RS13565at 2828.656 kb on + strand, within BWI76_RS13565at 2828.656 kb on + strand, within BWI76_RS13565at 2828.656 kb on + strand, within BWI76_RS13565at 2828.656 kb on + strand, within BWI76_RS13565at 2828.658 kb on + strand, within BWI76_RS13565at 2828.664 kb on - strand, within BWI76_RS13565at 2828.664 kb on - strand, within BWI76_RS13565at 2828.664 kb on - strand, within BWI76_RS13565at 2828.664 kb on - strand, within BWI76_RS13565at 2828.664 kb on - strand, within BWI76_RS13565at 2828.666 kb on - strand, within BWI76_RS13565at 2828.668 kb on + strand, within BWI76_RS13565at 2828.668 kb on + strand, within BWI76_RS13565at 2828.669 kb on + strandat 2828.669 kb on + strand, within BWI76_RS13565at 2828.669 kb on + strand, within BWI76_RS13565at 2828.670 kb on + strand, within BWI76_RS13565at 2828.677 kb on - strand, within BWI76_RS13565at 2828.677 kb on - strand, within BWI76_RS13565at 2828.710 kb on + strand, within BWI76_RS13565at 2828.710 kb on + strand, within BWI76_RS13565at 2828.710 kb on + strand, within BWI76_RS13565at 2828.710 kb on + strand, within BWI76_RS13565at 2828.710 kb on + strand, within BWI76_RS13565at 2828.710 kb on + strand, within BWI76_RS13565at 2828.710 kb on + strand, within BWI76_RS13565at 2828.710 kb on + strand, within BWI76_RS13565at 2828.710 kb on + strand, within BWI76_RS13565at 2828.710 kb on + strand, within BWI76_RS13565at 2828.710 kb on + strand, within BWI76_RS13565at 2828.710 kb on + strand, within BWI76_RS13565at 2828.710 kb on + strand, within BWI76_RS13565at 2828.710 kb on + strand, within BWI76_RS13565at 2828.710 kb on + strand, within BWI76_RS13565at 2828.710 kb on + strand, within BWI76_RS13565at 2828.710 kb on + strand, within BWI76_RS13565at 2828.710 kb on + strand, within BWI76_RS13565at 2828.710 kb on + strand, within BWI76_RS13565at 2828.710 kb on + strand, within BWI76_RS13565at 2828.710 kb on + strand, within BWI76_RS13565at 2828.711 kb on + strand, within BWI76_RS13565at 2828.718 kb on - strand, within BWI76_RS13565at 2828.718 kb on - strand, within BWI76_RS13565at 2828.718 kb on - strand, within BWI76_RS13565at 2828.718 kb on - strand, within BWI76_RS13565at 2828.718 kb on - strand, within BWI76_RS13565at 2828.718 kb on - strand, within BWI76_RS13565at 2828.718 kb on - strand, within BWI76_RS13565at 2828.718 kb on - strand, within BWI76_RS13565at 2828.718 kb on - strand, within BWI76_RS13565at 2828.718 kb on - strand, within BWI76_RS13565at 2828.718 kb on - strand, within BWI76_RS13565at 2828.718 kb on - strand, within BWI76_RS13565at 2828.718 kb on - strand, within BWI76_RS13565at 2828.718 kb on - strand, within BWI76_RS13565at 2828.719 kb on - strand, within BWI76_RS13565at 2828.719 kb on - strand, within BWI76_RS13565at 2828.719 kb on - strand, within BWI76_RS13565at 2828.790 kb on + strand, within BWI76_RS13565at 2828.790 kb on + strand, within BWI76_RS13565at 2828.797 kb on + strand, within BWI76_RS13565at 2828.798 kb on - strand, within BWI76_RS13565at 2828.832 kb on - strandat 2828.852 kb on + strandat 2828.860 kb on + strandat 2828.860 kb on - strandat 2828.862 kb on + strandat 2828.862 kb on + strandat 2828.862 kb on + strandat 2828.862 kb on + strandat 2828.862 kb on + strandat 2828.870 kb on - strandat 2828.870 kb on - strandat 2828.870 kb on - strandat 2828.870 kb on - strandat 2828.870 kb on - strandat 2828.870 kb on - strandat 2828.870 kb on - strandat 2828.870 kb on - strandat 2828.908 kb on + strandat 2828.967 kb on + strandat 2828.973 kb on - strandat 2828.975 kb on + strandat 2828.975 kb on + strandat 2828.975 kb on + strandat 2828.975 kb on + strandat 2828.975 kb on + strandat 2828.975 kb on + strandat 2828.975 kb on + strandat 2828.975 kb on + strandat 2828.977 kb on + strandat 2828.977 kb on + strandat 2828.977 kb on + strandat 2828.978 kb on - strandat 2828.983 kb on - strandat 2828.983 kb on - strandat 2828.983 kb on - strandat 2828.983 kb on - strandat 2828.983 kb on - strandat 2828.983 kb on - strandat 2828.984 kb on + strandat 2828.985 kb on - strandat 2828.985 kb on - strandat 2828.985 kb on - strandat 2828.985 kb on - strandat 2828.985 kb on - strandat 2828.988 kb on - strandat 2828.988 kb on - strandat 2828.989 kb on + strandat 2829.004 kb on - strandat 2829.004 kb on - strandat 2829.004 kb on - strandat 2829.021 kb on + strandat 2829.021 kb on + strandat 2829.022 kb on + strandat 2829.022 kb on + strandat 2829.030 kb on + strandat 2829.030 kb on - strandat 2829.041 kb on + strandat 2829.041 kb on + strandat 2829.049 kb on + strandat 2829.049 kb on - strandat 2829.049 kb on - strandat 2829.113 kb on + strandat 2829.148 kb on - strandat 2829.161 kb on - strandat 2829.254 kb on + strandat 2829.254 kb on + strandat 2829.255 kb on - strandat 2829.298 kb on + strandat 2829.396 kb on - strand, within BWI76_RS13570at 2829.480 kb on + strand, within BWI76_RS13570at 2829.615 kb on + strand, within BWI76_RS13570at 2829.695 kb on + strand, within BWI76_RS13570at 2829.800 kb on - strand, within BWI76_RS13570at 2829.906 kb on - strand, within BWI76_RS13570at 2829.995 kb on - strand, within BWI76_RS13570at 2829.997 kb on + strand, within BWI76_RS13570at 2830.087 kb on + strand, within BWI76_RS13570at 2830.957 kb on + strand, within BWI76_RS13575at 2831.040 kb on + strand, within BWI76_RS13575at 2831.250 kb on + strand, within BWI76_RS13575at 2831.250 kb on + strand, within BWI76_RS13575at 2831.302 kb on + strand, within BWI76_RS13575

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days
remove
2,828,209 + BWI76_RS13565 0.43 +0.6
2,828,209 + BWI76_RS13565 0.43 -0.0
2,828,212 - BWI76_RS13565 0.43 +0.3
2,828,212 - BWI76_RS13565 0.43 +0.2
2,828,217 - BWI76_RS13565 0.44 -0.1
2,828,228 - BWI76_RS13565 0.44 +0.4
2,828,228 - BWI76_RS13565 0.44 +0.1
2,828,263 - BWI76_RS13565 0.47 -0.4
2,828,263 - BWI76_RS13565 0.47 +0.1
2,828,263 - BWI76_RS13565 0.47 +1.1
2,828,263 - BWI76_RS13565 0.47 +0.2
2,828,272 + BWI76_RS13565 0.48 -0.8
2,828,281 - BWI76_RS13565 0.49 +0.1
2,828,307 - BWI76_RS13565 0.50 +1.1
2,828,314 + BWI76_RS13565 0.51 +0.4
2,828,372 - BWI76_RS13565 0.55 +0.1
2,828,383 - BWI76_RS13565 0.56 -0.8
2,828,384 - BWI76_RS13565 0.56 -0.5
2,828,406 + BWI76_RS13565 0.58 +1.1
2,828,414 - BWI76_RS13565 0.59 -0.2
2,828,420 - BWI76_RS13565 0.59 +0.1
2,828,449 + BWI76_RS13565 0.61 -0.9
2,828,498 + BWI76_RS13565 0.65 +0.8
2,828,498 + BWI76_RS13565 0.65 -0.9
2,828,498 + BWI76_RS13565 0.65 +0.8
2,828,498 + BWI76_RS13565 0.65 -0.5
2,828,498 + -2.6
2,828,498 + BWI76_RS13565 0.65 +0.1
2,828,500 + BWI76_RS13565 0.65 +1.2
2,828,506 - BWI76_RS13565 0.66 +0.6
2,828,506 - BWI76_RS13565 0.66 +0.2
2,828,508 - BWI76_RS13565 0.66 +1.0
2,828,513 + BWI76_RS13565 0.66 +0.8
2,828,513 + BWI76_RS13565 0.66 -0.4
2,828,513 + BWI76_RS13565 0.66 -0.1
2,828,513 + BWI76_RS13565 0.66 -0.5
2,828,513 + BWI76_RS13565 0.66 +1.6
2,828,515 + BWI76_RS13565 0.66 -0.2
2,828,521 - BWI76_RS13565 0.67 -1.8
2,828,521 - BWI76_RS13565 0.67 -0.5
2,828,523 - BWI76_RS13565 0.67 -0.4
2,828,527 + BWI76_RS13565 0.67 +0.3
2,828,528 - BWI76_RS13565 0.67 -0.3
2,828,571 + BWI76_RS13565 0.71 -0.1
2,828,583 - BWI76_RS13565 0.72 -0.3
2,828,583 - BWI76_RS13565 0.72 -1.5
2,828,590 + BWI76_RS13565 0.72 -1.4
2,828,590 + BWI76_RS13565 0.72 +0.2
2,828,597 - BWI76_RS13565 0.73 -1.0
2,828,598 - BWI76_RS13565 0.73 -0.6
2,828,598 - BWI76_RS13565 0.73 +0.7
2,828,656 + BWI76_RS13565 0.77 -0.1
2,828,656 + -2.0
2,828,656 + BWI76_RS13565 0.77 -0.4
2,828,656 + BWI76_RS13565 0.77 +0.4
2,828,656 + BWI76_RS13565 0.77 +0.1
2,828,656 + BWI76_RS13565 0.77 +0.3
2,828,656 + BWI76_RS13565 0.77 -0.7
2,828,658 + BWI76_RS13565 0.77 -1.0
2,828,664 - BWI76_RS13565 0.78 -3.1
2,828,664 - BWI76_RS13565 0.78 -0.0
2,828,664 - BWI76_RS13565 0.78 -0.3
2,828,664 - BWI76_RS13565 0.78 -1.8
2,828,664 - BWI76_RS13565 0.78 +0.4
2,828,666 - BWI76_RS13565 0.78 -0.0
2,828,668 + BWI76_RS13565 0.78 -0.2
2,828,668 + BWI76_RS13565 0.78 -0.2
2,828,669 + +0.1
2,828,669 + BWI76_RS13565 0.78 +0.2
2,828,669 + BWI76_RS13565 0.78 +0.2
2,828,670 + BWI76_RS13565 0.78 +0.4
2,828,677 - BWI76_RS13565 0.79 +0.2
2,828,677 - BWI76_RS13565 0.79 -0.4
2,828,710 + BWI76_RS13565 0.81 -1.0
2,828,710 + BWI76_RS13565 0.81 +0.9
2,828,710 + BWI76_RS13565 0.81 -0.3
2,828,710 + BWI76_RS13565 0.81 +0.4
2,828,710 + BWI76_RS13565 0.81 -0.5
2,828,710 + BWI76_RS13565 0.81 +1.2
2,828,710 + BWI76_RS13565 0.81 -0.4
2,828,710 + BWI76_RS13565 0.81 -0.8
2,828,710 + BWI76_RS13565 0.81 -0.1
2,828,710 + BWI76_RS13565 0.81 +0.1
2,828,710 + BWI76_RS13565 0.81 -0.1
2,828,710 + BWI76_RS13565 0.81 +0.5
2,828,710 + BWI76_RS13565 0.81 -0.2
2,828,710 + BWI76_RS13565 0.81 +0.3
2,828,710 + BWI76_RS13565 0.81 +0.6
2,828,710 + BWI76_RS13565 0.81 -0.1
2,828,710 + BWI76_RS13565 0.81 +0.4
2,828,710 + BWI76_RS13565 0.81 -0.1
2,828,710 + BWI76_RS13565 0.81 +1.0
2,828,710 + BWI76_RS13565 0.81 -0.4
2,828,710 + BWI76_RS13565 0.81 -0.2
2,828,711 + BWI76_RS13565 0.81 +0.7
2,828,718 - BWI76_RS13565 0.82 -0.4
2,828,718 - BWI76_RS13565 0.82 -0.1
2,828,718 - BWI76_RS13565 0.82 -0.6
2,828,718 - BWI76_RS13565 0.82 -0.3
2,828,718 - BWI76_RS13565 0.82 -0.3
2,828,718 - BWI76_RS13565 0.82 +1.2
2,828,718 - BWI76_RS13565 0.82 -0.1
2,828,718 - BWI76_RS13565 0.82 -0.1
2,828,718 - BWI76_RS13565 0.82 -0.1
2,828,718 - BWI76_RS13565 0.82 +0.7
2,828,718 - BWI76_RS13565 0.82 +0.4
2,828,718 - BWI76_RS13565 0.82 -0.4
2,828,718 - BWI76_RS13565 0.82 -0.1
2,828,718 - BWI76_RS13565 0.82 -0.3
2,828,719 - BWI76_RS13565 0.82 +0.6
2,828,719 - BWI76_RS13565 0.82 +0.1
2,828,719 - BWI76_RS13565 0.82 +0.4
2,828,790 + BWI76_RS13565 0.87 +0.0
2,828,790 + BWI76_RS13565 0.87 -0.0
2,828,797 + BWI76_RS13565 0.88 +1.7
2,828,798 - BWI76_RS13565 0.88 -1.1
2,828,832 - -0.1
2,828,852 + -0.4
2,828,860 + +0.2
2,828,860 - -0.2
2,828,862 + -0.2
2,828,862 + -0.4
2,828,862 + -0.5
2,828,862 + -0.2
2,828,862 + -0.2
2,828,870 - +0.0
2,828,870 - -1.2
2,828,870 - -0.2
2,828,870 - +2.5
2,828,870 - +0.2
2,828,870 - +0.7
2,828,870 - -0.2
2,828,870 - -0.6
2,828,908 + -1.2
2,828,967 + -0.3
2,828,973 - -0.1
2,828,975 + +0.1
2,828,975 + -2.2
2,828,975 + -0.3
2,828,975 + -0.4
2,828,975 + -1.9
2,828,975 + -0.3
2,828,975 + -0.0
2,828,975 + -0.5
2,828,977 + -0.0
2,828,977 + +0.9
2,828,977 + +0.4
2,828,978 - -1.6
2,828,983 - +0.7
2,828,983 - +0.2
2,828,983 - -0.7
2,828,983 - -0.4
2,828,983 - +0.3
2,828,983 - -0.4
2,828,984 + +0.3
2,828,985 - +0.0
2,828,985 - -0.6
2,828,985 - +1.0
2,828,985 - +0.1
2,828,985 - +0.1
2,828,988 - -1.0
2,828,988 - +0.6
2,828,989 + +3.4
2,829,004 - -0.1
2,829,004 - +0.3
2,829,004 - -0.4
2,829,021 + +0.1
2,829,021 + +0.5
2,829,022 + +1.1
2,829,022 + +0.6
2,829,030 + -0.1
2,829,030 - +0.8
2,829,041 + +0.1
2,829,041 + +0.3
2,829,049 + +0.3
2,829,049 - -0.3
2,829,049 - +0.7
2,829,113 + -0.3
2,829,148 - -0.2
2,829,161 - +0.4
2,829,254 + +0.2
2,829,254 + +0.0
2,829,255 - -0.0
2,829,298 + +0.2
2,829,396 - BWI76_RS13570 0.17 +1.9
2,829,480 + BWI76_RS13570 0.24 +0.0
2,829,615 + BWI76_RS13570 0.36 -0.8
2,829,695 + BWI76_RS13570 0.42 +0.5
2,829,800 - BWI76_RS13570 0.51 +0.6
2,829,906 - BWI76_RS13570 0.60 +0.6
2,829,995 - BWI76_RS13570 0.67 -0.1
2,829,997 + BWI76_RS13570 0.68 +0.6
2,830,087 + BWI76_RS13570 0.75 +0.2
2,830,957 + BWI76_RS13575 0.27 -0.2
2,831,040 + BWI76_RS13575 0.35 +0.8
2,831,250 + BWI76_RS13575 0.56 +0.2
2,831,250 + BWI76_RS13575 0.56 -0.2
2,831,302 + BWI76_RS13575 0.61 -0.9

Or see this region's nucleotide sequence