Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS24525

Experiment: D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 3 days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS24515 and BWI76_RS24520 are separated by 0 nucleotidesBWI76_RS24520 and BWI76_RS24525 are separated by 8 nucleotidesBWI76_RS24525 and BWI76_RS24530 are separated by 151 nucleotides BWI76_RS24515: BWI76_RS24515 - urease accessory protein UreE, at 5,111,352 to 5,111,822 _RS24515 BWI76_RS24520: BWI76_RS24520 - urease accessory protein UreF, at 5,111,823 to 5,112,497 _RS24520 BWI76_RS24525: BWI76_RS24525 - urease accessory protein UreG, at 5,112,506 to 5,113,123 _RS24525 BWI76_RS24530: BWI76_RS24530 - cytosine/purines uracil thiamine allantoin permease, at 5,113,275 to 5,114,882 _RS24530 Position (kb) 5112 5113 5114Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5111.577 kb on + strand, within BWI76_RS24515at 5111.604 kb on - strand, within BWI76_RS24515at 5111.617 kb on + strand, within BWI76_RS24515at 5111.617 kb on + strand, within BWI76_RS24515at 5111.794 kb on + strandat 5111.940 kb on - strand, within BWI76_RS24520at 5112.028 kb on - strand, within BWI76_RS24520at 5112.135 kb on + strand, within BWI76_RS24520at 5112.143 kb on - strand, within BWI76_RS24520at 5112.392 kb on - strand, within BWI76_RS24520at 5112.511 kb on - strandat 5112.582 kb on - strand, within BWI76_RS24525at 5112.586 kb on + strand, within BWI76_RS24525at 5112.594 kb on - strand, within BWI76_RS24525at 5112.687 kb on - strand, within BWI76_RS24525at 5112.857 kb on - strand, within BWI76_RS24525at 5113.124 kb on + strandat 5113.124 kb on + strandat 5113.140 kb on + strandat 5113.140 kb on + strandat 5113.234 kb on - strandat 5113.241 kb on + strandat 5113.313 kb on + strandat 5113.329 kb on - strandat 5113.348 kb on + strandat 5113.356 kb on - strandat 5113.392 kb on - strandat 5113.539 kb on - strand, within BWI76_RS24530at 5113.570 kb on - strand, within BWI76_RS24530at 5113.570 kb on - strand, within BWI76_RS24530at 5113.581 kb on - strand, within BWI76_RS24530at 5113.721 kb on + strand, within BWI76_RS24530at 5113.799 kb on + strand, within BWI76_RS24530at 5113.941 kb on - strand, within BWI76_RS24530at 5113.945 kb on + strand, within BWI76_RS24530at 5113.953 kb on - strand, within BWI76_RS24530at 5114.064 kb on + strand, within BWI76_RS24530at 5114.064 kb on + strand, within BWI76_RS24530

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 3 days
remove
5,111,577 + BWI76_RS24515 0.48 -0.9
5,111,604 - BWI76_RS24515 0.54 +0.3
5,111,617 + BWI76_RS24515 0.56 +0.7
5,111,617 + BWI76_RS24515 0.56 -1.7
5,111,794 + +1.6
5,111,940 - BWI76_RS24520 0.17 +1.0
5,112,028 - BWI76_RS24520 0.30 +0.9
5,112,135 + BWI76_RS24520 0.46 +0.9
5,112,143 - BWI76_RS24520 0.47 +0.5
5,112,392 - BWI76_RS24520 0.84 +0.8
5,112,511 - +2.5
5,112,582 - BWI76_RS24525 0.12 +1.7
5,112,586 + BWI76_RS24525 0.13 +0.3
5,112,594 - BWI76_RS24525 0.14 -4.1
5,112,687 - BWI76_RS24525 0.29 -0.1
5,112,857 - BWI76_RS24525 0.57 -1.9
5,113,124 + +1.0
5,113,124 + +1.0
5,113,140 + +0.0
5,113,140 + +0.3
5,113,234 - +0.8
5,113,241 + +0.9
5,113,313 + -2.5
5,113,329 - -0.5
5,113,348 + +0.7
5,113,356 - +0.4
5,113,392 - +1.0
5,113,539 - BWI76_RS24530 0.16 +0.5
5,113,570 - BWI76_RS24530 0.18 +0.1
5,113,570 - BWI76_RS24530 0.18 +0.7
5,113,581 - BWI76_RS24530 0.19 +1.1
5,113,721 + BWI76_RS24530 0.28 +1.3
5,113,799 + BWI76_RS24530 0.33 +1.6
5,113,941 - BWI76_RS24530 0.41 -0.4
5,113,945 + BWI76_RS24530 0.42 +1.2
5,113,953 - BWI76_RS24530 0.42 -0.2
5,114,064 + BWI76_RS24530 0.49 +0.8
5,114,064 + BWI76_RS24530 0.49 +0.1

Or see this region's nucleotide sequence