Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19945

Experiment: D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 3 days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS19940 and BWI76_RS19945 are separated by 103 nucleotidesBWI76_RS19945 and BWI76_RS19950 overlap by 1 nucleotidesBWI76_RS19950 and BWI76_RS19955 are separated by 71 nucleotides BWI76_RS19940: BWI76_RS19940 - ribonucleoside-diphosphate reductase subunit alpha, at 4,175,186 to 4,177,471 _RS19940 BWI76_RS19945: BWI76_RS19945 - ribonucleotide-diphosphate reductase subunit beta, at 4,177,575 to 4,178,705 _RS19945 BWI76_RS19950: BWI76_RS19950 - (2Fe-2S) ferredoxin, at 4,178,705 to 4,178,959 _RS19950 BWI76_RS19955: BWI76_RS19955 - glycerophosphoryl diester phosphodiesterase, at 4,179,031 to 4,180,101 _RS19955 Position (kb) 4177 4178 4179Strain fitness (log2 ratio) -1 0 1at 4179.269 kb on - strand, within BWI76_RS19955at 4179.346 kb on - strand, within BWI76_RS19955at 4179.401 kb on + strand, within BWI76_RS19955at 4179.409 kb on - strand, within BWI76_RS19955at 4179.461 kb on + strand, within BWI76_RS19955at 4179.562 kb on - strand, within BWI76_RS19955at 4179.678 kb on - strand, within BWI76_RS19955

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 3 days
remove
4,179,269 - BWI76_RS19955 0.22 +0.2
4,179,346 - BWI76_RS19955 0.29 +0.5
4,179,401 + BWI76_RS19955 0.35 -1.1
4,179,409 - BWI76_RS19955 0.35 +0.1
4,179,461 + BWI76_RS19955 0.40 +0.1
4,179,562 - BWI76_RS19955 0.50 +1.2
4,179,678 - BWI76_RS19955 0.60 -0.4

Or see this region's nucleotide sequence