Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09595

Experiment: D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 3 days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS09590 and BWI76_RS09595 are separated by 172 nucleotidesBWI76_RS09595 and BWI76_RS09600 overlap by 4 nucleotides BWI76_RS09590: BWI76_RS09590 - ATP-dependent OLD family endonuclease, at 2,005,650 to 2,007,308 _RS09590 BWI76_RS09595: BWI76_RS09595 - macrolide transporter subunit MacA, at 2,007,481 to 2,008,596 _RS09595 BWI76_RS09600: BWI76_RS09600 - macrolide ABC transporter permease/ATP-binding protein MacB, at 2,008,593 to 2,010,539 _RS09600 Position (kb) 2007 2008 2009Strain fitness (log2 ratio) -2 -1 0 1 2at 2006.654 kb on + strand, within BWI76_RS09590at 2006.665 kb on - strand, within BWI76_RS09590at 2006.788 kb on + strand, within BWI76_RS09590at 2006.938 kb on + strand, within BWI76_RS09590at 2007.241 kb on + strandat 2007.303 kb on + strandat 2007.311 kb on - strandat 2007.332 kb on + strandat 2007.340 kb on - strandat 2007.360 kb on - strandat 2007.360 kb on - strandat 2007.375 kb on - strandat 2007.459 kb on + strandat 2007.545 kb on - strandat 2007.616 kb on + strand, within BWI76_RS09595at 2007.915 kb on - strand, within BWI76_RS09595at 2008.219 kb on + strand, within BWI76_RS09595at 2008.422 kb on + strand, within BWI76_RS09595at 2008.669 kb on - strandat 2008.822 kb on + strand, within BWI76_RS09600at 2009.085 kb on - strand, within BWI76_RS09600at 2009.174 kb on - strand, within BWI76_RS09600at 2009.179 kb on - strand, within BWI76_RS09600at 2009.291 kb on - strand, within BWI76_RS09600at 2009.342 kb on - strand, within BWI76_RS09600

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 3 days
remove
2,006,654 + BWI76_RS09590 0.61 +1.1
2,006,665 - BWI76_RS09590 0.61 +0.7
2,006,788 + BWI76_RS09590 0.69 -0.5
2,006,938 + BWI76_RS09590 0.78 -0.3
2,007,241 + +1.9
2,007,303 + -1.8
2,007,311 - +0.2
2,007,332 + +0.3
2,007,340 - +0.5
2,007,360 - +1.6
2,007,360 - -0.4
2,007,375 - +1.1
2,007,459 + +2.4
2,007,545 - -1.0
2,007,616 + BWI76_RS09595 0.12 +0.8
2,007,915 - BWI76_RS09595 0.39 +0.2
2,008,219 + BWI76_RS09595 0.66 +0.3
2,008,422 + BWI76_RS09595 0.84 +1.6
2,008,669 - +0.1
2,008,822 + BWI76_RS09600 0.12 +0.4
2,009,085 - BWI76_RS09600 0.25 +0.0
2,009,174 - BWI76_RS09600 0.30 +0.7
2,009,179 - BWI76_RS09600 0.30 +0.5
2,009,291 - BWI76_RS09600 0.36 -0.7
2,009,342 - BWI76_RS09600 0.38 +1.9

Or see this region's nucleotide sequence