Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS03645

Experiment: D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 3 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS03640 and BWI76_RS03645 overlap by 4 nucleotidesBWI76_RS03645 and BWI76_RS03650 are separated by 451 nucleotidesBWI76_RS03650 and BWI76_RS03655 overlap by 2 nucleotidesBWI76_RS03655 and BWI76_RS03660 overlap by 29 nucleotides BWI76_RS03640: BWI76_RS03640 - amino acid permease-associated protein, at 751,683 to 753,026 _RS03640 BWI76_RS03645: BWI76_RS03645 - hypothetical protein, at 753,023 to 753,934 _RS03645 BWI76_RS03650: BWI76_RS03650 - endoribonuclease SymE, at 754,386 to 754,721 _RS03650 BWI76_RS03655: BWI76_RS03655 - hypothetical protein, at 754,720 to 754,920 _RS03655 BWI76_RS03660: BWI76_RS03660 - hypothetical protein, at 754,892 to 756,757 _RS03660 Position (kb) 753 754Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 752.242 kb on + strand, within BWI76_RS03640at 752.243 kb on - strand, within BWI76_RS03640at 752.243 kb on - strand, within BWI76_RS03640at 752.366 kb on - strand, within BWI76_RS03640at 752.412 kb on - strand, within BWI76_RS03640at 752.460 kb on - strand, within BWI76_RS03640at 752.582 kb on + strand, within BWI76_RS03640at 752.590 kb on - strand, within BWI76_RS03640at 752.597 kb on + strand, within BWI76_RS03640at 752.626 kb on - strand, within BWI76_RS03640at 752.697 kb on - strand, within BWI76_RS03640at 752.697 kb on - strand, within BWI76_RS03640at 752.782 kb on - strand, within BWI76_RS03640at 752.789 kb on - strand, within BWI76_RS03640at 752.961 kb on - strandat 753.069 kb on + strandat 753.077 kb on - strandat 753.140 kb on + strand, within BWI76_RS03645at 753.148 kb on - strand, within BWI76_RS03645at 753.580 kb on + strand, within BWI76_RS03645at 753.673 kb on - strand, within BWI76_RS03645at 753.684 kb on - strand, within BWI76_RS03645at 753.730 kb on + strand, within BWI76_RS03645at 753.744 kb on + strand, within BWI76_RS03645at 753.773 kb on - strand, within BWI76_RS03645at 753.774 kb on - strand, within BWI76_RS03645at 753.848 kb on - strandat 753.848 kb on - strandat 753.858 kb on - strandat 753.858 kb on - strandat 753.866 kb on - strandat 753.874 kb on - strandat 753.874 kb on - strandat 753.874 kb on - strandat 753.885 kb on + strandat 753.887 kb on - strandat 753.887 kb on - strandat 753.887 kb on - strandat 753.888 kb on - strandat 753.891 kb on + strandat 753.893 kb on - strandat 753.902 kb on + strandat 753.903 kb on + strandat 753.903 kb on + strandat 753.903 kb on + strandat 753.903 kb on + strandat 753.903 kb on + strandat 753.903 kb on + strandat 753.910 kb on - strandat 753.910 kb on - strandat 753.910 kb on - strandat 753.910 kb on - strandat 753.911 kb on - strandat 753.911 kb on - strandat 753.911 kb on - strandat 753.911 kb on - strandat 753.911 kb on - strandat 753.911 kb on - strandat 753.911 kb on - strandat 753.911 kb on - strandat 753.911 kb on - strandat 753.937 kb on + strandat 753.954 kb on - strandat 753.956 kb on - strandat 753.987 kb on + strandat 754.018 kb on - strandat 754.093 kb on - strandat 754.170 kb on + strandat 754.177 kb on + strandat 754.177 kb on + strandat 754.177 kb on + strandat 754.185 kb on + strandat 754.198 kb on + strandat 754.198 kb on + strandat 754.203 kb on + strandat 754.211 kb on + strandat 754.219 kb on - strandat 754.219 kb on - strandat 754.243 kb on + strandat 754.243 kb on + strandat 754.258 kb on - strandat 754.261 kb on + strandat 754.261 kb on + strandat 754.261 kb on + strandat 754.261 kb on + strandat 754.261 kb on + strandat 754.261 kb on + strandat 754.261 kb on + strandat 754.261 kb on + strandat 754.261 kb on + strandat 754.261 kb on + strandat 754.261 kb on + strandat 754.261 kb on + strandat 754.261 kb on + strandat 754.261 kb on + strandat 754.261 kb on + strandat 754.261 kb on + strandat 754.261 kb on + strandat 754.262 kb on + strandat 754.262 kb on + strandat 754.262 kb on - strandat 754.269 kb on - strandat 754.269 kb on - strandat 754.269 kb on - strandat 754.269 kb on - strandat 754.269 kb on - strandat 754.270 kb on - strandat 754.276 kb on - strandat 754.288 kb on + strandat 754.303 kb on + strandat 754.313 kb on + strandat 754.320 kb on - strandat 754.320 kb on - strandat 754.320 kb on - strandat 754.333 kb on + strandat 754.351 kb on + strandat 754.351 kb on + strandat 754.351 kb on + strandat 754.351 kb on + strandat 754.354 kb on - strandat 754.354 kb on - strandat 754.356 kb on + strandat 754.359 kb on - strandat 754.359 kb on - strandat 754.359 kb on - strandat 754.361 kb on + strandat 754.361 kb on + strandat 754.361 kb on + strandat 754.361 kb on + strandat 754.364 kb on - strandat 754.364 kb on - strandat 754.392 kb on - strandat 754.394 kb on + strandat 754.394 kb on + strandat 754.400 kb on - strandat 754.402 kb on - strandat 754.402 kb on - strandat 754.402 kb on - strandat 754.402 kb on - strandat 754.407 kb on - strandat 754.422 kb on + strand, within BWI76_RS03650at 754.422 kb on + strand, within BWI76_RS03650at 754.430 kb on - strand, within BWI76_RS03650at 754.430 kb on - strand, within BWI76_RS03650at 754.430 kb on - strand, within BWI76_RS03650at 754.430 kb on - strand, within BWI76_RS03650at 754.430 kb on - strand, within BWI76_RS03650at 754.439 kb on + strand, within BWI76_RS03650at 754.439 kb on + strand, within BWI76_RS03650at 754.488 kb on - strand, within BWI76_RS03650at 754.488 kb on - strand, within BWI76_RS03650at 754.498 kb on - strand, within BWI76_RS03650at 754.520 kb on + strand, within BWI76_RS03650at 754.520 kb on + strand, within BWI76_RS03650at 754.520 kb on + strand, within BWI76_RS03650at 754.523 kb on - strand, within BWI76_RS03650at 754.523 kb on - strand, within BWI76_RS03650at 754.523 kb on - strand, within BWI76_RS03650at 754.527 kb on + strand, within BWI76_RS03650at 754.528 kb on - strand, within BWI76_RS03650at 754.528 kb on - strand, within BWI76_RS03650at 754.528 kb on - strand, within BWI76_RS03650at 754.535 kb on - strand, within BWI76_RS03650at 754.610 kb on + strand, within BWI76_RS03650at 754.632 kb on - strand, within BWI76_RS03650at 754.632 kb on - strand, within BWI76_RS03650at 754.649 kb on - strand, within BWI76_RS03650at 754.655 kb on - strand, within BWI76_RS03650at 754.679 kb on + strand, within BWI76_RS03650at 754.679 kb on + strand, within BWI76_RS03650at 754.679 kb on + strand, within BWI76_RS03650at 754.687 kb on - strand, within BWI76_RS03650at 754.687 kb on - strand, within BWI76_RS03650at 754.687 kb on - strand, within BWI76_RS03650at 754.687 kb on - strand, within BWI76_RS03650at 754.715 kb on - strandat 754.717 kb on + strandat 754.725 kb on - strandat 754.733 kb on - strandat 754.755 kb on - strand, within BWI76_RS03655at 754.755 kb on - strand, within BWI76_RS03655at 754.768 kb on + strand, within BWI76_RS03655at 754.769 kb on + strand, within BWI76_RS03655at 754.770 kb on - strand, within BWI76_RS03655at 754.776 kb on - strand, within BWI76_RS03655at 754.810 kb on - strand, within BWI76_RS03655at 754.861 kb on + strand, within BWI76_RS03655at 754.874 kb on - strand, within BWI76_RS03655at 754.876 kb on - strand, within BWI76_RS03655at 754.877 kb on + strand, within BWI76_RS03655

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 3 days
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752,242 + BWI76_RS03640 0.42 +0.2
752,243 - BWI76_RS03640 0.42 -0.3
752,243 - BWI76_RS03640 0.42 +0.1
752,366 - BWI76_RS03640 0.51 +1.0
752,412 - BWI76_RS03640 0.54 -0.1
752,460 - BWI76_RS03640 0.58 +0.9
752,582 + BWI76_RS03640 0.67 +0.4
752,590 - BWI76_RS03640 0.67 +0.2
752,597 + BWI76_RS03640 0.68 -2.7
752,626 - BWI76_RS03640 0.70 +0.4
752,697 - BWI76_RS03640 0.75 -0.6
752,697 - BWI76_RS03640 0.75 -0.2
752,782 - BWI76_RS03640 0.82 -0.9
752,789 - BWI76_RS03640 0.82 +0.5
752,961 - +1.5
753,069 + +0.9
753,077 - +0.5
753,140 + BWI76_RS03645 0.13 +0.7
753,148 - BWI76_RS03645 0.14 +0.5
753,580 + BWI76_RS03645 0.61 +1.6
753,673 - BWI76_RS03645 0.71 +0.5
753,684 - BWI76_RS03645 0.72 +0.2
753,730 + BWI76_RS03645 0.78 +1.9
753,744 + BWI76_RS03645 0.79 +0.6
753,773 - BWI76_RS03645 0.82 +0.6
753,774 - BWI76_RS03645 0.82 -0.0
753,848 - +0.4
753,848 - +0.4
753,858 - -0.1
753,858 - +0.8
753,866 - -0.5
753,874 - +2.0
753,874 - +0.5
753,874 - +0.7
753,885 + -0.8
753,887 - +0.8
753,887 - +0.4
753,887 - -0.3
753,888 - -0.4
753,891 + +1.0
753,893 - -0.5
753,902 + -0.2
753,903 + +0.1
753,903 + +1.8
753,903 + +0.3
753,903 + -0.5
753,903 + -1.4
753,903 + +1.4
753,910 - -1.0
753,910 - +0.8
753,910 - -0.0
753,910 - +0.3
753,911 - +1.4
753,911 - +0.4
753,911 - +1.0
753,911 - -0.2
753,911 - -3.2
753,911 - -2.2
753,911 - +0.7
753,911 - +1.6
753,911 - +0.4
753,937 + +2.6
753,954 - +0.2
753,956 - +0.7
753,987 + -0.4
754,018 - -3.0
754,093 - +0.2
754,170 + +1.1
754,177 + -0.5
754,177 + +0.6
754,177 + -0.0
754,185 + -1.1
754,198 + +0.5
754,198 + +1.4
754,203 + -1.5
754,211 + +0.9
754,219 - -2.5
754,219 - -1.1
754,243 + +1.1
754,243 + -1.2
754,258 - +0.1
754,261 + -0.4
754,261 + +0.7
754,261 + +0.6
754,261 + -1.0
754,261 + -0.3
754,261 + +0.4
754,261 + +0.2
754,261 + -3.5
754,261 + -0.1
754,261 + +0.2
754,261 + -1.2
754,261 + -1.0
754,261 + -0.3
754,261 + +0.7
754,261 + -0.3
754,261 + +0.9
754,261 + -0.2
754,262 + +0.3
754,262 + -0.4
754,262 - -1.9
754,269 - -0.2
754,269 - -1.1
754,269 - -2.4
754,269 - -1.6
754,269 - -0.0
754,270 - +0.0
754,276 - -3.2
754,288 + +0.5
754,303 + +0.9
754,313 + +0.1
754,320 - -0.0
754,320 - -1.7
754,320 - +0.5
754,333 + -2.5
754,351 + +2.3
754,351 + -0.2
754,351 + +0.2
754,351 + -2.6
754,354 - -2.6
754,354 - -1.7
754,356 + -0.1
754,359 - +0.5
754,359 - -0.0
754,359 - -0.2
754,361 + -0.4
754,361 + +1.0
754,361 + +0.1
754,361 + -1.5
754,364 - +0.8
754,364 - +0.9
754,392 - +0.2
754,394 + +0.8
754,394 + +0.6
754,400 - +1.7
754,402 - +0.6
754,402 - -2.5
754,402 - +1.5
754,402 - +2.0
754,407 - -0.8
754,422 + BWI76_RS03650 0.11 -1.1
754,422 + BWI76_RS03650 0.11 -0.2
754,430 - BWI76_RS03650 0.13 +1.0
754,430 - BWI76_RS03650 0.13 +0.5
754,430 - BWI76_RS03650 0.13 +2.4
754,430 - BWI76_RS03650 0.13 -0.1
754,430 - BWI76_RS03650 0.13 -0.7
754,439 + BWI76_RS03650 0.16 -1.7
754,439 + BWI76_RS03650 0.16 -0.6
754,488 - BWI76_RS03650 0.30 +0.5
754,488 - BWI76_RS03650 0.30 -1.9
754,498 - BWI76_RS03650 0.33 -2.7
754,520 + BWI76_RS03650 0.40 +0.8
754,520 + BWI76_RS03650 0.40 +0.7
754,520 + BWI76_RS03650 0.40 +0.5
754,523 - BWI76_RS03650 0.41 +1.1
754,523 - BWI76_RS03650 0.41 +0.1
754,523 - BWI76_RS03650 0.41 +1.2
754,527 + BWI76_RS03650 0.42 +0.5
754,528 - BWI76_RS03650 0.42 +1.0
754,528 - BWI76_RS03650 0.42 +0.7
754,528 - BWI76_RS03650 0.42 +1.3
754,535 - BWI76_RS03650 0.44 -0.3
754,610 + BWI76_RS03650 0.67 -0.1
754,632 - BWI76_RS03650 0.73 -3.9
754,632 - BWI76_RS03650 0.73 +0.6
754,649 - BWI76_RS03650 0.78 -0.5
754,655 - BWI76_RS03650 0.80 -0.5
754,679 + BWI76_RS03650 0.87 +0.5
754,679 + BWI76_RS03650 0.87 +0.3
754,679 + BWI76_RS03650 0.87 +0.1
754,687 - BWI76_RS03650 0.90 +1.4
754,687 - BWI76_RS03650 0.90 +0.2
754,687 - BWI76_RS03650 0.90 +1.0
754,687 - BWI76_RS03650 0.90 -0.0
754,715 - -1.7
754,717 + -0.4
754,725 - +0.3
754,733 - +0.1
754,755 - BWI76_RS03655 0.17 +1.0
754,755 - BWI76_RS03655 0.17 +0.1
754,768 + BWI76_RS03655 0.24 -2.1
754,769 + BWI76_RS03655 0.24 +0.2
754,770 - BWI76_RS03655 0.25 +0.8
754,776 - BWI76_RS03655 0.28 -1.4
754,810 - BWI76_RS03655 0.45 -3.9
754,861 + BWI76_RS03655 0.70 +0.9
754,874 - BWI76_RS03655 0.77 +1.0
754,876 - BWI76_RS03655 0.78 +0.4
754,877 + BWI76_RS03655 0.78 +2.5

Or see this region's nucleotide sequence