Experiment: PEG (Day 1) - Cage4;Mouse1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0285 and BT0286 overlap by 17 nucleotides BT0286 and BT0287 are separated by 4 nucleotides BT0287 and BT0288 overlap by 26 nucleotides BT0288 and BT0289 are separated by 257 nucleotides
BT0285: BT0285 - putative tolQ-type transport protein (NCBI ptt file), at 330,174 to 331,592
BT0285
BT0286: BT0286 - hypothetical protein (NCBI ptt file), at 331,576 to 332,022
BT0286
BT0287: BT0287 - putative biopolymer transmembrane protein (NCBI ptt file), at 332,027 to 332,452
BT0287
BT0288: BT0288 - conserved hypothetical protein (NCBI ptt file), at 332,427 to 333,950
BT0288
BT0289: BT0289 - conserved hypothetical protein (NCBI ptt file), at 334,208 to 336,898
BT0289
Position (kb) 332
333
334 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8 at 331.508 kb on - strand at 331.511 kb on + strand at 331.514 kb on + strand at 331.515 kb on - strand at 331.515 kb on - strand at 331.515 kb on - strand at 331.545 kb on - strand at 331.607 kb on + strand at 331.632 kb on - strand, within BT0286 at 331.674 kb on + strand, within BT0286 at 331.675 kb on - strand, within BT0286 at 331.770 kb on - strand, within BT0286 at 331.820 kb on - strand, within BT0286 at 331.906 kb on - strand, within BT0286 at 331.906 kb on - strand, within BT0286 at 331.950 kb on - strand, within BT0286 at 331.984 kb on + strand at 331.990 kb on - strand at 332.027 kb on - strand at 332.045 kb on - strand at 332.045 kb on - strand at 332.221 kb on - strand, within BT0287 at 332.246 kb on + strand at 332.306 kb on - strand, within BT0287 at 332.339 kb on - strand, within BT0287 at 332.344 kb on + strand, within BT0287 at 332.410 kb on + strand at 332.412 kb on + strand at 332.427 kb on - strand at 332.549 kb on + strand at 332.877 kb on + strand, within BT0288 at 332.877 kb on + strand, within BT0288 at 332.877 kb on + strand, within BT0288 at 332.878 kb on - strand, within BT0288 at 332.940 kb on - strand, within BT0288 at 332.980 kb on - strand, within BT0288 at 333.346 kb on - strand, within BT0288 at 333.437 kb on - strand, within BT0288 at 333.439 kb on - strand, within BT0288 at 333.440 kb on + strand, within BT0288 at 333.440 kb on + strand, within BT0288 at 333.443 kb on + strand, within BT0288 at 333.453 kb on + strand, within BT0288 at 333.454 kb on - strand, within BT0288 at 333.456 kb on - strand, within BT0288 at 333.456 kb on - strand, within BT0288 at 333.460 kb on + strand, within BT0288 at 333.460 kb on + strand, within BT0288 at 333.461 kb on - strand, within BT0288 at 333.517 kb on + strand, within BT0288 at 333.517 kb on + strand, within BT0288 at 333.517 kb on + strand, within BT0288 at 333.518 kb on - strand, within BT0288 at 333.540 kb on + strand, within BT0288 at 333.540 kb on + strand, within BT0288 at 333.540 kb on + strand, within BT0288 at 333.542 kb on + strand, within BT0288 at 333.557 kb on - strand, within BT0288 at 333.560 kb on + strand, within BT0288 at 333.665 kb on + strand, within BT0288 at 333.700 kb on - strand, within BT0288 at 333.735 kb on - strand, within BT0288 at 333.768 kb on - strand, within BT0288 at 333.768 kb on - strand, within BT0288 at 333.784 kb on + strand, within BT0288 at 333.800 kb on - strand at 333.810 kb on + strand at 333.816 kb on - strand at 333.826 kb on - strand at 333.827 kb on + strand at 333.879 kb on - strand at 333.931 kb on + strand at 333.949 kb on - strand at 333.972 kb on + strand at 333.986 kb on + strand at 334.136 kb on - strand at 334.136 kb on - strand at 334.136 kb on - strand at 334.136 kb on - strand at 334.249 kb on + strand at 334.268 kb on - strand at 334.268 kb on - strand at 334.362 kb on - strand at 334.364 kb on - strand at 334.364 kb on - strand at 334.369 kb on - strand at 334.369 kb on - strand at 334.371 kb on - strand at 334.371 kb on - strand at 334.517 kb on + strand, within BT0289 at 334.546 kb on + strand, within BT0289 at 334.688 kb on - strand, within BT0289 at 334.697 kb on - strand, within BT0289 at 334.891 kb on + strand, within BT0289 at 334.904 kb on - strand, within BT0289
Per-strain Table
Position Strand Gene LocusTag Fraction PEG (Day 1) - Cage4;Mouse1 remove 331,508 - -1.6 331,511 + -1.3 331,514 + -0.4 331,515 - +1.8 331,515 - -1.0 331,515 - +1.1 331,545 - +0.6 331,607 + +1.6 331,632 - BT0286 0.13 -1.6 331,674 + BT0286 0.22 -1.0 331,675 - BT0286 0.22 -1.6 331,770 - BT0286 0.43 +0.9 331,820 - BT0286 0.55 -0.0 331,906 - BT0286 0.74 -2.0 331,906 - BT0286 0.74 -1.0 331,950 - BT0286 0.84 +0.2 331,984 + +0.6 331,990 - -0.4 332,027 - -2.0 332,045 - -0.0 332,045 - -2.4 332,221 - BT0287 0.46 -0.8 332,246 + +0.6 332,306 - BT0287 0.65 +1.0 332,339 - BT0287 0.73 +2.0 332,344 + BT0287 0.74 -0.8 332,410 + -0.8 332,412 + +1.0 332,427 - +2.9 332,549 + -1.0 332,877 + BT0288 0.30 -1.8 332,877 + BT0288 0.30 -0.0 332,877 + BT0288 0.30 -2.6 332,878 - BT0288 0.30 +0.6 332,940 - BT0288 0.34 +0.7 332,980 - BT0288 0.36 -0.3 333,346 - BT0288 0.60 -0.8 333,437 - BT0288 0.66 -0.8 333,439 - BT0288 0.66 +0.1 333,440 + BT0288 0.66 +1.6 333,440 + BT0288 0.66 +0.6 333,443 + BT0288 0.67 -2.1 333,453 + BT0288 0.67 -1.8 333,454 - BT0288 0.67 +1.6 333,456 - BT0288 0.68 +1.1 333,456 - BT0288 0.68 -2.4 333,460 + BT0288 0.68 +1.6 333,460 + BT0288 0.68 +1.0 333,461 - BT0288 0.68 -0.0 333,517 + BT0288 0.72 -0.8 333,517 + BT0288 0.72 -0.0 333,517 + BT0288 0.72 -0.6 333,518 - BT0288 0.72 -1.5 333,540 + BT0288 0.73 -1.8 333,540 + BT0288 0.73 -0.0 333,540 + BT0288 0.73 +1.2 333,542 + BT0288 0.73 -0.8 333,557 - BT0288 0.74 -0.1 333,560 + BT0288 0.74 +8.5 333,665 + BT0288 0.81 -0.8 333,700 - BT0288 0.84 +0.1 333,735 - BT0288 0.86 -0.3 333,768 - BT0288 0.88 -2.0 333,768 - BT0288 0.88 -0.4 333,784 + BT0288 0.89 +1.1 333,800 - +0.6 333,810 + -1.3 333,816 - -1.3 333,826 - -0.0 333,827 + -1.8 333,879 - -1.3 333,931 + -0.8 333,949 - -1.0 333,972 + -0.8 333,986 + -0.4 334,136 - +1.8 334,136 - -0.6 334,136 - -2.1 334,136 - -2.0 334,249 + -1.1 334,268 - -0.0 334,268 - -0.8 334,362 - -0.0 334,364 - -0.2 334,364 - -1.9 334,369 - +0.4 334,369 - -1.9 334,371 - -1.8 334,371 - -1.6 334,517 + BT0289 0.11 -0.0 334,546 + BT0289 0.13 -1.4 334,688 - BT0289 0.18 -1.0 334,697 - BT0289 0.18 -1.3 334,891 + BT0289 0.25 -0.8 334,904 - BT0289 0.26 -0.8
Or see this region's nucleotide sequence