Experiment: R2A-HEPES control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01809 and SMc01810 are separated by 18 nucleotides SMc01810 and SMc04433 are separated by 507 nucleotides SMc04433 and SMc01811 overlap by 229 nucleotides
SMc01809: SMc01809 - O-acetylhomoserine aminocarboxypropyltransferase, at 1,354,426 to 1,355,706
SMc01809
SMc01810: SMc01810 - hypothetical protein, at 1,355,725 to 1,356,066
SMc01810
SMc04433: SMc04433 - hypothetical protein, at 1,356,574 to 1,356,903
SMc04433
SMc01811: SMc01811 - hypothetical protein, at 1,356,675 to 1,357,718
SMc01811
Position (kb)
1355
1356
1357 Strain fitness (log2 ratio)
-1
0
1
2 at 1354.993 kb on + strand, within SMc01809 at 1355.026 kb on - strand, within SMc01809 at 1355.100 kb on + strand, within SMc01809 at 1355.100 kb on + strand, within SMc01809 at 1355.129 kb on - strand, within SMc01809 at 1355.129 kb on - strand, within SMc01809 at 1355.476 kb on + strand, within SMc01809 at 1355.733 kb on + strand at 1355.733 kb on + strand at 1355.733 kb on + strand at 1355.733 kb on + strand at 1355.733 kb on + strand at 1355.851 kb on + strand, within SMc01810 at 1355.861 kb on + strand, within SMc01810 at 1355.862 kb on - strand, within SMc01810 at 1355.862 kb on - strand, within SMc01810 at 1355.896 kb on + strand, within SMc01810 at 1355.911 kb on + strand, within SMc01810 at 1356.050 kb on - strand at 1356.097 kb on + strand at 1356.097 kb on + strand at 1356.104 kb on + strand at 1356.136 kb on + strand at 1356.136 kb on + strand at 1356.136 kb on + strand at 1356.163 kb on + strand at 1356.163 kb on + strand at 1356.164 kb on - strand at 1356.166 kb on + strand at 1356.166 kb on + strand at 1356.166 kb on + strand at 1356.167 kb on - strand at 1356.167 kb on - strand at 1356.167 kb on - strand at 1356.167 kb on - strand at 1356.269 kb on + strand at 1356.333 kb on + strand at 1356.333 kb on + strand at 1356.334 kb on - strand at 1356.334 kb on - strand at 1356.334 kb on - strand at 1356.403 kb on + strand at 1356.403 kb on + strand at 1356.403 kb on + strand at 1356.404 kb on - strand at 1356.404 kb on - strand at 1356.404 kb on - strand at 1356.404 kb on - strand at 1356.828 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments remove 1,354,993 + SMc01809 0.44 -0.6 1,355,026 - SMc01809 0.47 +0.1 1,355,100 + SMc01809 0.53 +0.2 1,355,100 + SMc01809 0.53 +0.1 1,355,129 - SMc01809 0.55 +0.4 1,355,129 - SMc01809 0.55 -0.6 1,355,476 + SMc01809 0.82 +1.4 1,355,733 + -0.1 1,355,733 + +0.1 1,355,733 + -0.4 1,355,733 + -0.2 1,355,733 + -0.3 1,355,851 + SMc01810 0.37 +0.5 1,355,861 + SMc01810 0.40 +0.3 1,355,862 - SMc01810 0.40 +0.9 1,355,862 - SMc01810 0.40 -0.2 1,355,896 + SMc01810 0.50 +0.0 1,355,911 + SMc01810 0.54 +1.4 1,356,050 - -0.2 1,356,097 + +0.0 1,356,097 + +0.1 1,356,104 + +0.1 1,356,136 + +2.7 1,356,136 + -0.2 1,356,136 + +0.2 1,356,163 + -0.3 1,356,163 + -0.2 1,356,164 - +1.1 1,356,166 + -1.4 1,356,166 + +0.2 1,356,166 + -0.2 1,356,167 - -0.2 1,356,167 - -0.1 1,356,167 - -0.6 1,356,167 - -0.1 1,356,269 + -0.2 1,356,333 + -0.6 1,356,333 + +0.4 1,356,334 - +0.6 1,356,334 - +0.2 1,356,334 - +0.9 1,356,403 + -0.1 1,356,403 + -0.2 1,356,403 + +0.2 1,356,404 - +0.1 1,356,404 - +0.2 1,356,404 - +0.6 1,356,404 - -0.0 1,356,828 + -0.0
Or see this region's nucleotide sequence