Strain Fitness in Sinorhizobium meliloti 1021 around SMc01810

Experiment: R2A-HEPES control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01809 and SMc01810 are separated by 18 nucleotidesSMc01810 and SMc04433 are separated by 507 nucleotidesSMc04433 and SMc01811 overlap by 229 nucleotides SMc01809: SMc01809 - O-acetylhomoserine aminocarboxypropyltransferase, at 1,354,426 to 1,355,706 SMc01809 SMc01810: SMc01810 - hypothetical protein, at 1,355,725 to 1,356,066 SMc01810 SMc04433: SMc04433 - hypothetical protein, at 1,356,574 to 1,356,903 SMc04433 SMc01811: SMc01811 - hypothetical protein, at 1,356,675 to 1,357,718 SMc01811 Position (kb) 1355 1356 1357Strain fitness (log2 ratio) -1 0 1 2at 1354.993 kb on + strand, within SMc01809at 1355.026 kb on - strand, within SMc01809at 1355.100 kb on + strand, within SMc01809at 1355.100 kb on + strand, within SMc01809at 1355.129 kb on - strand, within SMc01809at 1355.129 kb on - strand, within SMc01809at 1355.476 kb on + strand, within SMc01809at 1355.733 kb on + strandat 1355.733 kb on + strandat 1355.733 kb on + strandat 1355.733 kb on + strandat 1355.733 kb on + strandat 1355.851 kb on + strand, within SMc01810at 1355.861 kb on + strand, within SMc01810at 1355.862 kb on - strand, within SMc01810at 1355.862 kb on - strand, within SMc01810at 1355.896 kb on + strand, within SMc01810at 1355.911 kb on + strand, within SMc01810at 1356.050 kb on - strandat 1356.097 kb on + strandat 1356.097 kb on + strandat 1356.104 kb on + strandat 1356.136 kb on + strandat 1356.136 kb on + strandat 1356.136 kb on + strandat 1356.163 kb on + strandat 1356.163 kb on + strandat 1356.164 kb on - strandat 1356.166 kb on + strandat 1356.166 kb on + strandat 1356.166 kb on + strandat 1356.167 kb on - strandat 1356.167 kb on - strandat 1356.167 kb on - strandat 1356.167 kb on - strandat 1356.269 kb on + strandat 1356.333 kb on + strandat 1356.333 kb on + strandat 1356.334 kb on - strandat 1356.334 kb on - strandat 1356.334 kb on - strandat 1356.403 kb on + strandat 1356.403 kb on + strandat 1356.403 kb on + strandat 1356.404 kb on - strandat 1356.404 kb on - strandat 1356.404 kb on - strandat 1356.404 kb on - strandat 1356.828 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments
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1,354,993 + SMc01809 0.44 -0.6
1,355,026 - SMc01809 0.47 +0.1
1,355,100 + SMc01809 0.53 +0.2
1,355,100 + SMc01809 0.53 +0.1
1,355,129 - SMc01809 0.55 +0.4
1,355,129 - SMc01809 0.55 -0.6
1,355,476 + SMc01809 0.82 +1.4
1,355,733 + -0.1
1,355,733 + +0.1
1,355,733 + -0.4
1,355,733 + -0.2
1,355,733 + -0.3
1,355,851 + SMc01810 0.37 +0.5
1,355,861 + SMc01810 0.40 +0.3
1,355,862 - SMc01810 0.40 +0.9
1,355,862 - SMc01810 0.40 -0.2
1,355,896 + SMc01810 0.50 +0.0
1,355,911 + SMc01810 0.54 +1.4
1,356,050 - -0.2
1,356,097 + +0.0
1,356,097 + +0.1
1,356,104 + +0.1
1,356,136 + +2.7
1,356,136 + -0.2
1,356,136 + +0.2
1,356,163 + -0.3
1,356,163 + -0.2
1,356,164 - +1.1
1,356,166 + -1.4
1,356,166 + +0.2
1,356,166 + -0.2
1,356,167 - -0.2
1,356,167 - -0.1
1,356,167 - -0.6
1,356,167 - -0.1
1,356,269 + -0.2
1,356,333 + -0.6
1,356,333 + +0.4
1,356,334 - +0.6
1,356,334 - +0.2
1,356,334 - +0.9
1,356,403 + -0.1
1,356,403 + -0.2
1,356,403 + +0.2
1,356,404 - +0.1
1,356,404 - +0.2
1,356,404 - +0.6
1,356,404 - -0.0
1,356,828 + -0.0

Or see this region's nucleotide sequence