Experiment: R2A-HEPES control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1747 and SMa1749 are separated by 39 nucleotides SMa1749 and SMa1750 are separated by 552 nucleotides
SMa1747: SMa1747 - TonB-dependent siderophore receptor, at 989,276 to 991,420
SMa1747
SMa1749: SMa1749 - transcriptional regulator, at 991,460 to 992,359
SMa1749
SMa1750: SMa1750 - hypothetical protein, at 992,912 to 994,291
SMa1750
Position (kb) 991
992
993 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 990.497 kb on + strand, within SMa1747 at 990.536 kb on + strand, within SMa1747 at 990.537 kb on - strand, within SMa1747 at 990.605 kb on + strand, within SMa1747 at 990.635 kb on - strand, within SMa1747 at 990.635 kb on - strand, within SMa1747 at 990.733 kb on + strand, within SMa1747 at 990.783 kb on - strand, within SMa1747 at 990.909 kb on - strand, within SMa1747 at 990.909 kb on - strand, within SMa1747 at 990.954 kb on - strand, within SMa1747 at 990.954 kb on - strand, within SMa1747 at 991.017 kb on + strand, within SMa1747 at 991.027 kb on + strand, within SMa1747 at 991.047 kb on - strand, within SMa1747 at 991.052 kb on + strand, within SMa1747 at 991.053 kb on - strand, within SMa1747 at 991.126 kb on - strand, within SMa1747 at 991.145 kb on + strand, within SMa1747 at 991.202 kb on + strand, within SMa1747 at 991.203 kb on - strand, within SMa1747 at 991.203 kb on - strand, within SMa1747 at 991.214 kb on + strand at 991.215 kb on - strand at 991.218 kb on - strand at 991.218 kb on - strand at 991.218 kb on - strand at 991.371 kb on - strand at 991.374 kb on - strand at 991.374 kb on - strand at 991.461 kb on + strand at 991.461 kb on + strand at 991.859 kb on + strand, within SMa1749 at 991.859 kb on + strand, within SMa1749 at 991.859 kb on + strand, within SMa1749 at 991.859 kb on + strand, within SMa1749 at 991.860 kb on - strand, within SMa1749 at 991.860 kb on - strand, within SMa1749 at 991.861 kb on + strand, within SMa1749 at 991.892 kb on - strand, within SMa1749 at 991.901 kb on + strand, within SMa1749 at 991.902 kb on - strand, within SMa1749 at 991.970 kb on + strand, within SMa1749 at 991.970 kb on + strand, within SMa1749 at 991.971 kb on - strand, within SMa1749 at 992.033 kb on - strand, within SMa1749 at 992.048 kb on - strand, within SMa1749 at 992.063 kb on - strand, within SMa1749 at 992.063 kb on - strand, within SMa1749 at 992.109 kb on + strand, within SMa1749 at 992.109 kb on + strand, within SMa1749 at 992.109 kb on + strand, within SMa1749 at 992.110 kb on - strand, within SMa1749 at 992.145 kb on - strand at 992.145 kb on - strand, within SMa1749 at 992.226 kb on + strand, within SMa1749 at 992.229 kb on + strand, within SMa1749 at 992.230 kb on - strand, within SMa1749 at 992.230 kb on - strand, within SMa1749 at 992.364 kb on - strand at 992.454 kb on + strand at 992.454 kb on + strand at 992.454 kb on + strand at 992.504 kb on + strand at 992.505 kb on - strand at 992.822 kb on - strand at 992.861 kb on + strand at 992.861 kb on + strand at 992.863 kb on + strand at 992.864 kb on - strand at 992.864 kb on - strand at 992.887 kb on + strand at 992.888 kb on - strand at 992.912 kb on - strand at 992.994 kb on + strand at 992.995 kb on - strand at 993.162 kb on + strand at 993.162 kb on + strand, within SMa1750 at 993.162 kb on + strand, within SMa1750 at 993.162 kb on + strand, within SMa1750 at 993.162 kb on + strand, within SMa1750 at 993.163 kb on - strand, within SMa1750 at 993.163 kb on - strand, within SMa1750 at 993.169 kb on + strand, within SMa1750
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments remove 990,497 + SMa1747 0.57 +0.8 990,536 + SMa1747 0.59 -0.3 990,537 - SMa1747 0.59 +0.1 990,605 + SMa1747 0.62 -0.7 990,635 - SMa1747 0.63 +0.3 990,635 - SMa1747 0.63 +0.0 990,733 + SMa1747 0.68 +0.2 990,783 - SMa1747 0.70 -1.1 990,909 - SMa1747 0.76 +0.4 990,909 - SMa1747 0.76 -0.4 990,954 - SMa1747 0.78 +1.2 990,954 - SMa1747 0.78 -0.7 991,017 + SMa1747 0.81 +2.8 991,027 + SMa1747 0.82 -0.3 991,047 - SMa1747 0.83 +0.2 991,052 + SMa1747 0.83 -2.2 991,053 - SMa1747 0.83 -0.6 991,126 - SMa1747 0.86 -1.0 991,145 + SMa1747 0.87 -1.7 991,202 + SMa1747 0.90 -0.2 991,203 - SMa1747 0.90 +0.1 991,203 - SMa1747 0.90 -0.5 991,214 + -0.0 991,215 - +0.4 991,218 - +0.0 991,218 - +0.7 991,218 - -0.4 991,371 - -0.3 991,374 - +0.4 991,374 - -2.0 991,461 + -0.3 991,461 + -0.1 991,859 + SMa1749 0.44 +0.0 991,859 + SMa1749 0.44 +0.2 991,859 + SMa1749 0.44 -0.5 991,859 + SMa1749 0.44 -0.3 991,860 - SMa1749 0.44 +0.4 991,860 - SMa1749 0.44 -0.5 991,861 + SMa1749 0.45 -0.3 991,892 - SMa1749 0.48 -0.5 991,901 + SMa1749 0.49 -0.6 991,902 - SMa1749 0.49 -1.0 991,970 + SMa1749 0.57 -0.8 991,970 + SMa1749 0.57 -0.2 991,971 - SMa1749 0.57 -0.1 992,033 - SMa1749 0.64 +0.8 992,048 - SMa1749 0.65 -0.5 992,063 - SMa1749 0.67 +1.3 992,063 - SMa1749 0.67 -0.2 992,109 + SMa1749 0.72 -0.7 992,109 + SMa1749 0.72 -0.5 992,109 + SMa1749 0.72 -0.3 992,110 - SMa1749 0.72 +0.3 992,145 - -0.7 992,145 - SMa1749 0.76 +0.2 992,226 + SMa1749 0.85 -0.5 992,229 + SMa1749 0.85 -0.8 992,230 - SMa1749 0.86 -0.5 992,230 - SMa1749 0.86 +1.8 992,364 - +1.7 992,454 + -0.3 992,454 + +0.7 992,454 + -0.3 992,504 + -0.4 992,505 - -0.6 992,822 - +0.0 992,861 + +0.5 992,861 + +1.6 992,863 + -0.0 992,864 - -0.6 992,864 - -0.2 992,887 + +0.9 992,888 - +0.1 992,912 - +0.2 992,994 + -0.3 992,995 - -0.2 993,162 + -0.5 993,162 + SMa1750 0.18 +0.9 993,162 + SMa1750 0.18 +0.5 993,162 + SMa1750 0.18 +0.3 993,162 + SMa1750 0.18 -0.7 993,163 - SMa1750 0.18 -0.2 993,163 - SMa1750 0.18 +0.7 993,169 + SMa1750 0.19 +0.6
Or see this region's nucleotide sequence