Experiment: R2A-HEPES control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21686 and SM_b21484 are separated by 38 nucleotides SM_b21484 and SM_b21687 are separated by 65 nucleotides SM_b21687 and SM_b21485 are separated by 142 nucleotides SM_b21485 and SM_b21486 overlap by 32 nucleotides
SM_b21686: SM_b21686 - hypothetical protein, at 1,405,094 to 1,405,279
_b21686
SM_b21484: SM_b21484 - RNA polymerase sigma-E factor (sigma-24) protein, at 1,405,318 to 1,405,839
_b21484
SM_b21687: SM_b21687 - hypothetical protein, at 1,405,905 to 1,406,099
_b21687
SM_b21485: SM_b21485 - hypothetical protein, at 1,406,242 to 1,406,682
_b21485
SM_b21486: SM_b21486 - metabolite transport protein, at 1,406,651 to 1,407,991
_b21486
Position (kb) 1406
1407 Strain fitness (log2 ratio) -2
-1
0
1 at 1405.296 kb on - strand at 1405.296 kb on - strand at 1405.311 kb on - strand at 1405.555 kb on + strand, within SM_b21484 at 1405.556 kb on - strand, within SM_b21484 at 1405.556 kb on - strand, within SM_b21484 at 1405.556 kb on - strand, within SM_b21484 at 1405.556 kb on - strand, within SM_b21484 at 1405.556 kb on - strand, within SM_b21484 at 1405.655 kb on + strand, within SM_b21484 at 1405.656 kb on - strand, within SM_b21484 at 1405.656 kb on - strand, within SM_b21484 at 1405.729 kb on + strand, within SM_b21484 at 1405.729 kb on + strand, within SM_b21484 at 1405.730 kb on - strand, within SM_b21484 at 1405.730 kb on - strand, within SM_b21484 at 1405.730 kb on - strand, within SM_b21484 at 1405.731 kb on + strand, within SM_b21484 at 1405.732 kb on - strand, within SM_b21484 at 1405.732 kb on - strand, within SM_b21484 at 1405.748 kb on + strand, within SM_b21484 at 1405.748 kb on + strand at 1405.749 kb on - strand, within SM_b21484 at 1405.749 kb on - strand, within SM_b21484 at 1405.767 kb on + strand, within SM_b21484 at 1406.028 kb on - strand, within SM_b21687 at 1406.028 kb on - strand, within SM_b21687 at 1406.077 kb on - strand, within SM_b21687 at 1406.090 kb on - strand at 1406.098 kb on - strand at 1406.129 kb on - strand at 1406.186 kb on - strand at 1406.251 kb on + strand at 1406.252 kb on - strand at 1406.536 kb on + strand, within SM_b21485 at 1406.536 kb on + strand, within SM_b21485 at 1406.537 kb on - strand, within SM_b21485 at 1406.537 kb on - strand, within SM_b21485 at 1406.562 kb on - strand, within SM_b21485 at 1406.652 kb on + strand at 1406.724 kb on + strand at 1406.725 kb on - strand at 1406.727 kb on + strand at 1406.727 kb on + strand at 1406.834 kb on - strand, within SM_b21486 at 1406.836 kb on - strand, within SM_b21486 at 1406.836 kb on - strand, within SM_b21486 at 1406.841 kb on + strand, within SM_b21486 at 1407.409 kb on - strand, within SM_b21486 at 1407.409 kb on - strand, within SM_b21486
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments remove 1,405,296 - -0.3 1,405,296 - -0.0 1,405,311 - -0.3 1,405,555 + SM_b21484 0.45 +0.2 1,405,556 - SM_b21484 0.46 -0.0 1,405,556 - SM_b21484 0.46 -1.9 1,405,556 - SM_b21484 0.46 -1.5 1,405,556 - SM_b21484 0.46 -0.7 1,405,556 - SM_b21484 0.46 +1.1 1,405,655 + SM_b21484 0.65 +0.0 1,405,656 - SM_b21484 0.65 +0.0 1,405,656 - SM_b21484 0.65 +0.5 1,405,729 + SM_b21484 0.79 +0.2 1,405,729 + SM_b21484 0.79 -0.4 1,405,730 - SM_b21484 0.79 +0.9 1,405,730 - SM_b21484 0.79 -0.0 1,405,730 - SM_b21484 0.79 -0.9 1,405,731 + SM_b21484 0.79 +0.3 1,405,732 - SM_b21484 0.79 +0.6 1,405,732 - SM_b21484 0.79 +0.4 1,405,748 + SM_b21484 0.82 +0.1 1,405,748 + +0.3 1,405,749 - SM_b21484 0.83 +0.0 1,405,749 - SM_b21484 0.83 -0.2 1,405,767 + SM_b21484 0.86 +0.1 1,406,028 - SM_b21687 0.63 -0.7 1,406,028 - SM_b21687 0.63 -0.4 1,406,077 - SM_b21687 0.88 -0.0 1,406,090 - -0.4 1,406,098 - -0.2 1,406,129 - -0.3 1,406,186 - +0.2 1,406,251 + +0.6 1,406,252 - +0.1 1,406,536 + SM_b21485 0.67 -0.5 1,406,536 + SM_b21485 0.67 +0.1 1,406,537 - SM_b21485 0.67 -1.3 1,406,537 - SM_b21485 0.67 -0.7 1,406,562 - SM_b21485 0.73 -0.8 1,406,652 + -1.1 1,406,724 + -0.9 1,406,725 - -0.1 1,406,727 + -0.1 1,406,727 + -0.6 1,406,834 - SM_b21486 0.14 -0.7 1,406,836 - SM_b21486 0.14 +1.0 1,406,836 - SM_b21486 0.14 -0.2 1,406,841 + SM_b21486 0.14 -0.3 1,407,409 - SM_b21486 0.57 -0.3 1,407,409 - SM_b21486 0.57 +0.2
Or see this region's nucleotide sequence