Strain Fitness in Sinorhizobium meliloti 1021 around SMc01774

Experiment: R2A-HEPES control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01772 and SMc01773 are separated by 0 nucleotidesSMc01773 and SMc01774 are separated by 86 nucleotidesSMc01774 and SMc01775 are separated by 413 nucleotidesSMc01775 and SMc01776 are separated by 36 nucleotides SMc01772: SMc01772 - riboflavin biosynthesis protein, at 1,318,702 to 1,319,907 SMc01772 SMc01773: SMc01773 - riboflavin synthase subunit alpha, at 1,319,908 to 1,320,528 SMc01773 SMc01774: SMc01774 - hypothetical protein, at 1,320,615 to 1,320,965 SMc01774 SMc01775: SMc01775 - acetyltransferase, at 1,321,379 to 1,321,918 SMc01775 SMc01776: SMc01776 - auxin-binding protein, at 1,321,955 to 1,322,458 SMc01776 Position (kb) 1320 1321Strain fitness (log2 ratio) -1 0 1at 1319.901 kb on + strandat 1319.901 kb on + strandat 1319.901 kb on + strandat 1320.526 kb on + strandat 1320.625 kb on + strandat 1320.625 kb on + strandat 1320.625 kb on + strandat 1320.780 kb on - strand, within SMc01774at 1320.806 kb on + strand, within SMc01774at 1321.075 kb on - strandat 1321.297 kb on + strandat 1321.380 kb on + strandat 1321.380 kb on + strandat 1321.381 kb on - strandat 1321.381 kb on - strandat 1321.433 kb on - strand, within SMc01775at 1321.433 kb on - strand, within SMc01775at 1321.434 kb on + strand, within SMc01775at 1321.435 kb on - strand, within SMc01775at 1321.435 kb on - strand, within SMc01775at 1321.738 kb on - strand, within SMc01775at 1321.738 kb on - strand, within SMc01775at 1321.791 kb on + strand, within SMc01775at 1321.791 kb on + strand, within SMc01775at 1321.792 kb on - strand, within SMc01775at 1321.807 kb on + strand, within SMc01775at 1321.808 kb on - strand, within SMc01775at 1321.809 kb on + strand, within SMc01775at 1321.845 kb on + strand, within SMc01775at 1321.846 kb on - strand, within SMc01775at 1321.846 kb on - strandat 1321.884 kb on - strandat 1321.932 kb on - strandat 1321.950 kb on - strandat 1321.950 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments
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1,319,901 + -0.5
1,319,901 + -0.8
1,319,901 + +1.2
1,320,526 + -0.8
1,320,625 + -1.0
1,320,625 + -0.1
1,320,625 + +0.0
1,320,780 - SMc01774 0.47 -1.1
1,320,806 + SMc01774 0.54 -0.3
1,321,075 - +0.1
1,321,297 + -0.4
1,321,380 + +0.0
1,321,380 + +0.2
1,321,381 - -1.6
1,321,381 - -0.8
1,321,433 - SMc01775 0.10 -0.1
1,321,433 - SMc01775 0.10 +0.3
1,321,434 + SMc01775 0.10 +0.1
1,321,435 - SMc01775 0.10 -0.0
1,321,435 - SMc01775 0.10 -0.5
1,321,738 - SMc01775 0.66 -0.8
1,321,738 - SMc01775 0.66 -0.9
1,321,791 + SMc01775 0.76 +0.1
1,321,791 + SMc01775 0.76 +0.5
1,321,792 - SMc01775 0.76 -0.8
1,321,807 + SMc01775 0.79 -0.3
1,321,808 - SMc01775 0.79 -0.0
1,321,809 + SMc01775 0.80 +0.6
1,321,845 + SMc01775 0.86 -0.1
1,321,846 - SMc01775 0.86 +0.1
1,321,846 - -0.2
1,321,884 - +0.6
1,321,932 - -0.6
1,321,950 - -0.5
1,321,950 - +1.3

Or see this region's nucleotide sequence