Strain Fitness in Sinorhizobium meliloti 1021 around SMc01570

Experiment: R2A-HEPES control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01569 and SMc01570 are separated by 38 nucleotidesSMc01570 and SMc01571 are separated by 112 nucleotidesSMc01571 and SMc01572 are separated by 24 nucleotides SMc01569: SMc01569 - carbamoyl phosphate synthase small subunit, at 2,511,829 to 2,513,034 SMc01569 SMc01570: SMc01570 - transcriptional regulator, at 2,513,073 to 2,513,963 SMc01570 SMc01571: SMc01571 - oxidoreductase, at 2,514,076 to 2,514,837 SMc01571 SMc01572: SMc01572 - oxidoreductase, at 2,514,862 to 2,515,329 SMc01572 Position (kb) 2513 2514Strain fitness (log2 ratio) -2 -1 0 1at 2512.444 kb on + strand, within SMc01569at 2513.202 kb on - strand, within SMc01570at 2513.447 kb on - strand, within SMc01570at 2513.447 kb on - strand, within SMc01570at 2514.085 kb on + strandat 2514.085 kb on + strandat 2514.086 kb on - strandat 2514.156 kb on - strand, within SMc01571at 2514.173 kb on + strand, within SMc01571at 2514.173 kb on + strand, within SMc01571at 2514.173 kb on + strand, within SMc01571at 2514.173 kb on + strand, within SMc01571at 2514.174 kb on - strand, within SMc01571at 2514.386 kb on - strand, within SMc01571at 2514.386 kb on - strand, within SMc01571at 2514.386 kb on - strand, within SMc01571at 2514.386 kb on - strand, within SMc01571at 2514.524 kb on - strand, within SMc01571at 2514.592 kb on - strand, within SMc01571at 2514.627 kb on + strand, within SMc01571at 2514.627 kb on + strand, within SMc01571at 2514.628 kb on - strand, within SMc01571at 2514.936 kb on + strand, within SMc01572

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments
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2,512,444 + SMc01569 0.51 +1.7
2,513,202 - SMc01570 0.14 +0.1
2,513,447 - SMc01570 0.42 -1.3
2,513,447 - SMc01570 0.42 -1.6
2,514,085 + -0.0
2,514,085 + -1.0
2,514,086 - +0.1
2,514,156 - SMc01571 0.10 -0.4
2,514,173 + SMc01571 0.13 -0.1
2,514,173 + SMc01571 0.13 +0.2
2,514,173 + SMc01571 0.13 +0.7
2,514,173 + SMc01571 0.13 +0.7
2,514,174 - SMc01571 0.13 -0.2
2,514,386 - SMc01571 0.41 -0.8
2,514,386 - SMc01571 0.41 -1.6
2,514,386 - SMc01571 0.41 -1.0
2,514,386 - SMc01571 0.41 -2.1
2,514,524 - SMc01571 0.59 +0.1
2,514,592 - SMc01571 0.68 +0.3
2,514,627 + SMc01571 0.72 +0.8
2,514,627 + SMc01571 0.72 +0.7
2,514,628 - SMc01571 0.72 +0.3
2,514,936 + SMc01572 0.16 +1.7

Or see this region's nucleotide sequence