Strain Fitness in Sinorhizobium meliloti 1021 around SMa2347

Experiment: R2A-HEPES control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa5012 and SMa5013 overlap by 4 nucleotidesSMa5013 and SMa2347 are separated by 21 nucleotidesSMa2347 and SMa2349 are separated by 359 nucleotides SMa5012: SMa5012 - hypothetical protein, at 1,321,062 to 1,321,589 SMa5012 SMa5013: SMa5013 - hypothetical protein, at 1,321,586 to 1,321,999 SMa5013 SMa2347: SMa2347 - hypothetical protein, at 1,322,021 to 1,322,701 SMa2347 SMa2349: SMa2349 - xanthine dehydrogenase iron-sulfur-binding subunit, at 1,323,061 to 1,323,708 SMa2349 Position (kb) 1322 1323Strain fitness (log2 ratio) -2 -1 0 1 2at 1321.057 kb on - strandat 1321.160 kb on + strand, within SMa5012at 1321.194 kb on - strand, within SMa5012at 1321.194 kb on - strand, within SMa5012at 1321.311 kb on + strand, within SMa5012at 1321.397 kb on + strand, within SMa5012at 1321.398 kb on - strand, within SMa5012at 1321.398 kb on - strand, within SMa5012at 1321.398 kb on - strand, within SMa5012at 1321.398 kb on - strand, within SMa5012at 1321.476 kb on - strand, within SMa5012at 1321.489 kb on + strand, within SMa5012at 1321.490 kb on - strand, within SMa5012at 1321.636 kb on + strand, within SMa5013at 1321.678 kb on + strand, within SMa5013at 1321.710 kb on + strand, within SMa5013at 1321.760 kb on + strand, within SMa5013at 1321.760 kb on + strand, within SMa5013at 1321.790 kb on + strand, within SMa5013at 1321.790 kb on + strand, within SMa5013at 1321.791 kb on - strand, within SMa5013at 1321.791 kb on - strand, within SMa5013at 1321.823 kb on + strand, within SMa5013at 1321.824 kb on - strand, within SMa5013at 1321.825 kb on + strand, within SMa5013at 1321.856 kb on + strand, within SMa5013at 1321.856 kb on + strand, within SMa5013at 1321.961 kb on - strandat 1322.054 kb on - strandat 1322.062 kb on - strandat 1322.245 kb on + strand, within SMa2347at 1322.245 kb on + strand, within SMa2347at 1322.246 kb on - strand, within SMa2347at 1322.388 kb on - strand, within SMa2347at 1322.391 kb on + strand, within SMa2347at 1322.392 kb on - strand, within SMa2347at 1322.647 kb on - strandat 1322.647 kb on - strandat 1322.732 kb on + strandat 1322.816 kb on - strandat 1322.862 kb on - strandat 1323.002 kb on - strandat 1323.015 kb on + strandat 1323.022 kb on + strandat 1323.023 kb on - strandat 1323.023 kb on - strandat 1323.040 kb on + strandat 1323.303 kb on + strand, within SMa2349at 1323.558 kb on + strand, within SMa2349at 1323.640 kb on - strand, within SMa2349at 1323.642 kb on - strand, within SMa2349at 1323.658 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments
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1,321,057 - -0.3
1,321,160 + SMa5012 0.19 +0.7
1,321,194 - SMa5012 0.25 -1.0
1,321,194 - SMa5012 0.25 +2.1
1,321,311 + SMa5012 0.47 +0.8
1,321,397 + SMa5012 0.63 -0.1
1,321,398 - SMa5012 0.64 -0.4
1,321,398 - SMa5012 0.64 -1.5
1,321,398 - SMa5012 0.64 +0.5
1,321,398 - SMa5012 0.64 -0.5
1,321,476 - SMa5012 0.78 -0.2
1,321,489 + SMa5012 0.81 +0.2
1,321,490 - SMa5012 0.81 -0.2
1,321,636 + SMa5013 0.12 +0.3
1,321,678 + SMa5013 0.22 +0.8
1,321,710 + SMa5013 0.30 -0.6
1,321,760 + SMa5013 0.42 +0.4
1,321,760 + SMa5013 0.42 +0.4
1,321,790 + SMa5013 0.49 +0.1
1,321,790 + SMa5013 0.49 -0.6
1,321,791 - SMa5013 0.50 -1.0
1,321,791 - SMa5013 0.50 +0.2
1,321,823 + SMa5013 0.57 +1.1
1,321,824 - SMa5013 0.57 -1.8
1,321,825 + SMa5013 0.58 +0.1
1,321,856 + SMa5013 0.65 +1.5
1,321,856 + SMa5013 0.65 +1.1
1,321,961 - +1.5
1,322,054 - -0.1
1,322,062 - +0.5
1,322,245 + SMa2347 0.33 -0.8
1,322,245 + SMa2347 0.33 -0.4
1,322,246 - SMa2347 0.33 -0.2
1,322,388 - SMa2347 0.54 -0.6
1,322,391 + SMa2347 0.54 -1.0
1,322,392 - SMa2347 0.54 -1.1
1,322,647 - +0.5
1,322,647 - -0.2
1,322,732 + -0.8
1,322,816 - +0.2
1,322,862 - -0.5
1,323,002 - +1.7
1,323,015 + -0.5
1,323,022 + +1.1
1,323,023 - +0.5
1,323,023 - +0.6
1,323,040 + -0.0
1,323,303 + SMa2349 0.37 -0.3
1,323,558 + SMa2349 0.77 -0.6
1,323,640 - SMa2349 0.89 -0.5
1,323,642 - SMa2349 0.90 +1.1
1,323,658 + -0.3

Or see this region's nucleotide sequence