Experiment: R2A-HEPES control for volatile experiments
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20695 and SM_b20696 overlap by 4 nucleotides SM_b20696 and SM_b20697 are separated by 101 nucleotides SM_b20697 and SM_b20698 are separated by 151 nucleotides
SM_b20695: SM_b20695 - hypothetical protein, at 1,495,765 to 1,496,271
_b20695
SM_b20696: SM_b20696 - hypothetical protein, at 1,496,268 to 1,496,753
_b20696
SM_b20697: SM_b20697 - peptidase, arginine utilization protein RocB, at 1,496,855 to 1,498,549
_b20697
SM_b20698: SM_b20698 - transporter, at 1,498,701 to 1,500,353
_b20698
Position (kb)
1496
1497
1498
1499 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1495.870 kb on - strand, within SM_b20695 at 1495.870 kb on - strand, within SM_b20695 at 1495.870 kb on - strand, within SM_b20695 at 1496.006 kb on + strand, within SM_b20695 at 1496.006 kb on + strand, within SM_b20695 at 1496.007 kb on - strand, within SM_b20695 at 1496.007 kb on - strand, within SM_b20695 at 1496.007 kb on - strand, within SM_b20695 at 1496.046 kb on + strand, within SM_b20695 at 1496.047 kb on - strand, within SM_b20695 at 1496.079 kb on + strand, within SM_b20695 at 1496.126 kb on + strand, within SM_b20695 at 1496.145 kb on + strand, within SM_b20695 at 1496.275 kb on + strand at 1496.275 kb on + strand at 1496.275 kb on + strand at 1496.276 kb on - strand at 1496.276 kb on - strand at 1496.276 kb on - strand at 1496.276 kb on - strand at 1496.276 kb on - strand at 1496.364 kb on + strand, within SM_b20696 at 1496.420 kb on + strand, within SM_b20696 at 1496.433 kb on + strand, within SM_b20696 at 1496.531 kb on + strand, within SM_b20696 at 1496.531 kb on + strand, within SM_b20696 at 1496.532 kb on - strand, within SM_b20696 at 1496.532 kb on - strand, within SM_b20696 at 1496.535 kb on + strand, within SM_b20696 at 1496.535 kb on + strand, within SM_b20696 at 1496.535 kb on + strand, within SM_b20696 at 1496.536 kb on - strand, within SM_b20696 at 1496.536 kb on - strand, within SM_b20696 at 1496.686 kb on - strand, within SM_b20696 at 1496.766 kb on - strand at 1496.766 kb on - strand at 1496.786 kb on + strand at 1496.787 kb on - strand at 1496.844 kb on - strand at 1496.931 kb on + strand at 1496.932 kb on - strand at 1497.369 kb on + strand, within SM_b20697 at 1497.487 kb on - strand, within SM_b20697 at 1497.487 kb on - strand, within SM_b20697 at 1497.589 kb on - strand, within SM_b20697 at 1497.605 kb on + strand, within SM_b20697 at 1497.780 kb on + strand, within SM_b20697 at 1497.781 kb on - strand, within SM_b20697 at 1497.822 kb on - strand, within SM_b20697 at 1498.239 kb on + strand, within SM_b20697 at 1498.239 kb on + strand, within SM_b20697 at 1498.239 kb on + strand, within SM_b20697 at 1498.240 kb on - strand, within SM_b20697 at 1498.240 kb on - strand, within SM_b20697 at 1498.479 kb on - strand at 1498.702 kb on + strand at 1498.703 kb on - strand at 1499.098 kb on - strand, within SM_b20698 at 1499.098 kb on - strand, within SM_b20698 at 1499.123 kb on + strand, within SM_b20698
Per-strain Table
Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments remove 1,495,870 - SM_b20695 0.21 -0.1 1,495,870 - SM_b20695 0.21 -0.4 1,495,870 - SM_b20695 0.21 -0.0 1,496,006 + SM_b20695 0.48 +0.2 1,496,006 + SM_b20695 0.48 -0.5 1,496,007 - SM_b20695 0.48 -0.1 1,496,007 - SM_b20695 0.48 -0.1 1,496,007 - SM_b20695 0.48 -0.9 1,496,046 + SM_b20695 0.55 +0.4 1,496,047 - SM_b20695 0.56 +1.1 1,496,079 + SM_b20695 0.62 -0.2 1,496,126 + SM_b20695 0.71 -0.5 1,496,145 + SM_b20695 0.75 +0.6 1,496,275 + -0.3 1,496,275 + +0.7 1,496,275 + -0.6 1,496,276 - +1.6 1,496,276 - -1.1 1,496,276 - +0.8 1,496,276 - +0.1 1,496,276 - +0.2 1,496,364 + SM_b20696 0.20 -2.1 1,496,420 + SM_b20696 0.31 -0.1 1,496,433 + SM_b20696 0.34 -0.3 1,496,531 + SM_b20696 0.54 -1.2 1,496,531 + SM_b20696 0.54 -1.7 1,496,532 - SM_b20696 0.54 -0.2 1,496,532 - SM_b20696 0.54 +0.3 1,496,535 + SM_b20696 0.55 -0.5 1,496,535 + SM_b20696 0.55 -0.7 1,496,535 + SM_b20696 0.55 +0.0 1,496,536 - SM_b20696 0.55 -0.0 1,496,536 - SM_b20696 0.55 -0.4 1,496,686 - SM_b20696 0.86 +0.5 1,496,766 - -0.4 1,496,766 - +0.0 1,496,786 + -0.0 1,496,787 - +0.3 1,496,844 - -0.0 1,496,931 + +0.6 1,496,932 - +0.0 1,497,369 + SM_b20697 0.30 -0.9 1,497,487 - SM_b20697 0.37 +1.2 1,497,487 - SM_b20697 0.37 +1.0 1,497,589 - SM_b20697 0.43 -0.4 1,497,605 + SM_b20697 0.44 +0.3 1,497,780 + SM_b20697 0.55 +0.0 1,497,781 - SM_b20697 0.55 -0.5 1,497,822 - SM_b20697 0.57 +2.8 1,498,239 + SM_b20697 0.82 +0.2 1,498,239 + SM_b20697 0.82 +0.1 1,498,239 + SM_b20697 0.82 +0.8 1,498,240 - SM_b20697 0.82 +1.0 1,498,240 - SM_b20697 0.82 +0.3 1,498,479 - +2.1 1,498,702 + +0.3 1,498,703 - +1.3 1,499,098 - SM_b20698 0.24 -0.5 1,499,098 - SM_b20698 0.24 -0.3 1,499,123 + SM_b20698 0.26 -0.0
Or see this region's nucleotide sequence