Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20081

Experiment: R2A-HEPES control for volatile experiments

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20080 and SM_b20081 are separated by 19 nucleotidesSM_b20081 and SM_b20082 overlap by 4 nucleotides SM_b20080: SM_b20080 - alcohol dehydrogenase, at 91,546 to 92,715 _b20080 SM_b20081: SM_b20081 - hypothetical protein, at 92,735 to 93,445 _b20081 SM_b20082: SM_b20082 - hypothetical protein, at 93,442 to 94,260 _b20082 Position (kb) 92 93 94Strain fitness (log2 ratio) -3 -2 -1 0 1at 91.951 kb on - strand, within SM_b20080at 91.951 kb on - strand, within SM_b20080at 91.970 kb on - strand, within SM_b20080at 92.251 kb on + strand, within SM_b20080at 92.252 kb on - strand, within SM_b20080at 92.252 kb on - strand, within SM_b20080at 92.269 kb on + strand, within SM_b20080at 92.269 kb on + strand, within SM_b20080at 92.499 kb on - strand, within SM_b20080at 92.563 kb on + strand, within SM_b20080at 92.563 kb on + strand, within SM_b20080at 92.659 kb on + strandat 92.829 kb on + strand, within SM_b20081at 92.830 kb on - strand, within SM_b20081at 93.089 kb on - strand, within SM_b20081at 93.089 kb on - strand, within SM_b20081at 93.089 kb on - strand, within SM_b20081at 93.379 kb on + strandat 93.382 kb on - strandat 93.382 kb on - strandat 93.382 kb on - strandat 93.404 kb on + strandat 93.404 kb on + strandat 93.404 kb on + strandat 93.404 kb on + strandat 93.405 kb on - strandat 93.454 kb on - strandat 93.542 kb on + strand, within SM_b20082at 93.543 kb on - strand, within SM_b20082at 93.713 kb on + strand, within SM_b20082at 93.713 kb on + strand, within SM_b20082at 94.002 kb on - strand, within SM_b20082at 94.379 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A-HEPES control for volatile experiments
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91,951 - SM_b20080 0.35 +0.8
91,951 - SM_b20080 0.35 +0.6
91,970 - SM_b20080 0.36 -1.1
92,251 + SM_b20080 0.60 +0.2
92,252 - SM_b20080 0.60 +0.6
92,252 - SM_b20080 0.60 -0.3
92,269 + SM_b20080 0.62 +1.0
92,269 + SM_b20080 0.62 -0.0
92,499 - SM_b20080 0.81 -2.2
92,563 + SM_b20080 0.87 -0.7
92,563 + SM_b20080 0.87 -0.6
92,659 + -0.4
92,829 + SM_b20081 0.13 -0.6
92,830 - SM_b20081 0.13 -0.4
93,089 - SM_b20081 0.50 -0.7
93,089 - SM_b20081 0.50 -0.5
93,089 - SM_b20081 0.50 -0.3
93,379 + +0.2
93,382 - -0.8
93,382 - +0.6
93,382 - +0.3
93,404 + -2.4
93,404 + +0.4
93,404 + -0.5
93,404 + -0.4
93,405 - -0.1
93,454 - -2.8
93,542 + SM_b20082 0.12 -0.1
93,543 - SM_b20082 0.12 -0.9
93,713 + SM_b20082 0.33 +1.0
93,713 + SM_b20082 0.33 -0.2
94,002 - SM_b20082 0.68 -2.3
94,379 - -0.6

Or see this region's nucleotide sequence